DATF:: a database of Arabidopsis transcription factors

被引:247
|
作者
Guo, AY
He, K
Liu, D
Bai, SN
Gu, XC
Wei, LP
Luo, JC [1 ]
机构
[1] Peking Univ, Ctr Bioinformat, Beijing 100871, Peoples R China
[2] Peking Univ, Natl Lab Prot Engn & Plant Genet Engn, Beijing 100871, Peoples R China
[3] Peking Univ, Coll Life Sci, Beijing 100871, Peoples R China
基金
中国国家自然科学基金;
关键词
D O I
10.1093/bioinformatics/bti334
中图分类号
Q5 [生物化学];
学科分类号
071010 ; 081704 ;
摘要
We have probably developed the most comprehensive database of Arabidopsis transcription factors (DATF). The DATF contains known and predicted Arabidopsis transcription factors (1827 genes in 56 families) with the unique information of 1177 cloned sequences and many other features including 3D structure templates, EST expression information, transcription factor binding sites and nuclear location signals.
引用
收藏
页码:2568 / 2569
页数:2
相关论文
共 50 条
  • [31] REGULATOR: a database of metazoan transcription factors and maternal factors for developmental studies
    Kai Wang
    Hiroki Nishida
    BMC Bioinformatics, 16
  • [32] cTFbase: a database for comparative genomics of transcription factors in cyanobacteria
    Wu, Jinyu
    Zhao, Fangqing
    Wang, Shengqin
    Deng, Gang
    Wang, Junrong
    Bai, Jie
    Lu, Jianxin
    Qu, Jia
    Bao, Qiyu
    BMC GENOMICS, 2007, 8 (1)
  • [33] MeDReaders: a database for transcription factors that bind to methylated DNA
    Wang, Guohua
    Luo, Ximei
    Wang, Jianan
    Wan, Jun
    Xia, Shuli
    Zhu, Heng
    Qian, Jiang
    Wang, Yadong
    NUCLEIC ACIDS RESEARCH, 2018, 46 (D1) : D146 - D151
  • [34] ArchaeaTF: An integrated database of putative transcription factors in Archaea
    Wu, Jinyu
    Wang, Shengqin
    Bai, Jie
    Shi, Liang
    Li, Dong
    Xu, Zuyuan
    Niu, Yuxin
    Lu, Jianxin
    Bao, Qiyu
    GENOMICS, 2008, 91 (01) : 102 - 107
  • [35] Object-oriented Transcription Factors Database (ooTFD)
    Ghosh, D
    NUCLEIC ACIDS RESEARCH, 2000, 28 (01) : 308 - 310
  • [36] cTFbase: a database for comparative genomics of transcription factors in cyanobacteria
    Jinyu Wu
    Fangqing Zhao
    Shengqin Wang
    Gang Deng
    Junrong Wang
    Jie Bai
    Jianxin Lu
    Jia Qu
    Qiyu Bao
    BMC Genomics, 8
  • [37] GroovDB: A Database of Ligand-Inducible Transcription Factors
    d'Oelsnitz, Simon
    Love, Joshua D.
    Diaz, Daniel J.
    Ellington, Andrew D.
    ACS SYNTHETIC BIOLOGY, 2022, 11 (10): : 3534 - 3537
  • [38] TFTG: A comprehensive database for human transcription factors and their targets
    Zhou, Xinyuan
    Zhou, Liwei
    Qian, Fengcui
    Chen, Jiaxin
    Zhang, Yuexin
    Yu, Zhengmin
    Zhang, Jian
    Yang, Yongsan
    Li, Yanyu
    Song, Chao
    Wang, Yuezhu
    Shang, Desi
    Dong, Longlong
    Zhu, Jiang
    Li, Chunquan
    Wang, Qiuyu
    COMPUTATIONAL AND STRUCTURAL BIOTECHNOLOGY JOURNAL, 2024, 23 : 1877 - 1885
  • [39] TRANSFAC: A database on transcription factors and their DNA binding sites
    Wingender, E
    Dietze, P
    Karas, H
    Knuppel, R
    NUCLEIC ACIDS RESEARCH, 1996, 24 (01) : 238 - 241
  • [40] DBTBS:: a database of Bacillus subtilis promoters and transcription factors
    Ishii, T
    Yoshida, K
    Terai, G
    Fujita, Y
    Nakai, K
    NUCLEIC ACIDS RESEARCH, 2001, 29 (01) : 278 - 280