DATF:: a database of Arabidopsis transcription factors

被引:247
|
作者
Guo, AY
He, K
Liu, D
Bai, SN
Gu, XC
Wei, LP
Luo, JC [1 ]
机构
[1] Peking Univ, Ctr Bioinformat, Beijing 100871, Peoples R China
[2] Peking Univ, Natl Lab Prot Engn & Plant Genet Engn, Beijing 100871, Peoples R China
[3] Peking Univ, Coll Life Sci, Beijing 100871, Peoples R China
基金
中国国家自然科学基金;
关键词
D O I
10.1093/bioinformatics/bti334
中图分类号
Q5 [生物化学];
学科分类号
071010 ; 081704 ;
摘要
We have probably developed the most comprehensive database of Arabidopsis transcription factors (DATF). The DATF contains known and predicted Arabidopsis transcription factors (1827 genes in 56 families) with the unique information of 1177 cloned sequences and many other features including 3D structure templates, EST expression information, transcription factor binding sites and nuclear location signals.
引用
收藏
页码:2568 / 2569
页数:2
相关论文
共 50 条
  • [1] RARTF:: Database and tools for complete sets of Arabidopsis transcription factors
    Iida, Kei
    Seki, Motoaki
    Sakurai, Tetsuya
    Satou, Masakazu
    Akiyama, Kenji
    Toyoda, Tetsuro
    Konagaya, Akihiko
    Shinozaki, Kazuo
    DNA RESEARCH, 2005, 12 (04) : 247 - 256
  • [2] bZIP transcription factors in Arabidopsis
    Jakoby, M
    Weisshaar, B
    Dröge-Laser, W
    Vicente-Carbajosa, J
    Tiedemann, J
    Kroj, T
    Parcy, F
    TRENDS IN PLANT SCIENCE, 2002, 7 (03) : 106 - 111
  • [3] MYB transcription factors in Arabidopsis
    Dubos, Christian
    Stracke, Ralf
    Grotewold, Erich
    Weisshaar, Bernd
    Martin, Cathie
    Lepiniec, Loic
    TRENDS IN PLANT SCIENCE, 2010, 15 (10) : 573 - 581
  • [4] A RELATIONAL DATABASE OF TRANSCRIPTION FACTORS
    GHOSH, D
    NUCLEIC ACIDS RESEARCH, 1990, 18 (07) : 1749 - 1756
  • [5] TFD - THE TRANSCRIPTION FACTORS DATABASE
    GHOSH, D
    NUCLEIC ACIDS RESEARCH, 1992, 20 : 2091 - 2093
  • [6] Functional Analysis of Transcription Factors in Arabidopsis
    Mitsuda, Nobutaka
    Ohme-Takagi, Masaru
    PLANT AND CELL PHYSIOLOGY, 2009, 50 (07) : 1232 - 1248
  • [7] NEW DEVELOPMENTS OF A TRANSCRIPTION FACTORS DATABASE
    GHOSH, D
    TRENDS IN BIOCHEMICAL SCIENCES, 1991, 16 (11) : 445 - 447
  • [8] TrSDB: a proteome database of transcription factors
    Hermoso, A
    Aguilar, D
    Aviles, FX
    Querol, E
    NUCLEIC ACIDS RESEARCH, 2004, 32 : D171 - D173
  • [9] DPTF: a database of poplar transcription factors
    Zhu, Qi-Hui
    Guo, An-Yuan
    Gao, Ge
    Zhong, Ying-Fu
    Xu, Meng
    Huang, Minren
    Luo, Jinchu
    BIOINFORMATICS, 2007, 23 (10) : 1307 - 1308
  • [10] TOBFAC: the database of tobacco transcription factors
    Rushton, Paul J.
    Bokowiec, Marta T.
    Laudeman, Thomas W.
    Brannock, Jennifer F.
    Chen, Xianfeng
    Timko, Michael P.
    BMC BIOINFORMATICS, 2008, 9 (1)