Finding Dense and Connected Subgraphs in Dual Networks

被引:0
|
作者
Wu, Yubao [1 ]
Jin, Ruoming [2 ]
Zhu, Xiaofeng [3 ]
Zhang, Xiang [1 ]
机构
[1] Case Western Reserve Univ, Dept Elect Engn & Comp Sci, Cleveland, OH 44106 USA
[2] Kent State Univ, Dept Comp Sci, Kent, OH 44242 USA
[3] Case Western Reserve Univ, Dept Epidemiol & Biostat, Cleveland, OH 44106 USA
基金
美国国家科学基金会;
关键词
GENOME-WIDE ASSOCIATION; GENE;
D O I
暂无
中图分类号
TP [自动化技术、计算机技术];
学科分类号
0812 ;
摘要
Finding dense subgraphs is an important problem that has recently attracted a lot of interests. Most of the existing work focuses on a single graph (or network(1)). In many real-life applications, however, there exist dual networks, in which one network represents the physical world and another network represents the conceptual world. In this paper, we investigate the problem of finding the densest connected subgraph (DCS) which has the largest density in the conceptual network and is also connected in the physical network. Such pattern cannot be identified using the existing algorithms for a single network. We show that even though finding the densest subgraph in a single network is polynomial time solvable, the DCS problem is NP-hard. We develop a two-step approach to solve the DCS problem. In the first step, we effectively prune the dual networks while guarantee that the optimal solution is contained in the remaining networks. For the second step, we develop two efficient greedy methods based on different search strategies to find the DCS. Different variations of the DCS problem are also studied. We perform extensive experiments on a variety of real and synthetic dual networks to evaluate the effectiveness and efficiency of the developed methods.
引用
收藏
页码:915 / 926
页数:12
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