Charting improvements in US registry HLA typing ambiguity using a typing resolution score

被引:17
|
作者
Paunic, Vanja [1 ]
Gragert, Loren [1 ]
Schneider, Joel [1 ]
Mueller, Carlheinz [2 ]
Maiers, Martin [1 ]
机构
[1] Natl Marrow Donor Program, Bioinformat Res, 3001 Broadway St NE,Suite 100, Minneapolis, MN 55413 USA
[2] Zent Knochenmarkspender Register Deutsch, Helmholtzstr 10, D-89081 Ulm, Germany
关键词
Human leukocyte antigen; HLA typing; Typing ambiguity; Typing resolution score; Be The Match Registry; HEMATOPOIETIC-CELL TRANSPLANTATION; DONOR REGISTRY; INFORMATION; VALIDATION; HLA-DRB1; SURVIVAL;
D O I
10.1016/j.humimm.2016.05.002
中图分类号
R392 [医学免疫学]; Q939.91 [免疫学];
学科分类号
100102 ;
摘要
Unrelated stem cell registries have been collecting HLA typing of volunteer bone marrow donors for over 25 years. Donor selection for hematopoietic stem cell transplantation is based primarily on matching the alleles of donors and patients at five polymorphic HLA loci. As HLA typing technologies have continually advanced since the beginnings of stem cell transplantation, registries have accrued typings of varied HLA typing ambiguity. We present a new typing resolution score (TRS), based on the likelihood of self-match, that allows the systematic comparison of HLA typings across different methods, data sets and populations. We apply the TRS to chart improvement in HLA typing within the Be The Match Registry of the United States from the initiation of DNA-based HLA typing to the current state of high-resolution typing using next-generation sequencing technologies. In addition, we present a publicly available online tool for evaluation of any given HLA typing. This TRS objectively evaluates HLA typing methods and can help define standards for acceptable recruitment HLA typing. (C) 2016 American Society for Histocompatibility and Immunogenetics. Published by Elsevier Inc. All rights reserved.
引用
收藏
页码:542 / 549
页数:8
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