Glycine in aqueous solution: solvation shells, interfacial water, and vibrational spectroscopy from ab initio molecular dynamics

被引:62
|
作者
Sun, Jian [1 ]
Bousquet, David [1 ,2 ]
Forbert, Harald [1 ]
Marx, Dominik [1 ]
机构
[1] Ruhr Univ Bochum, Lehrstuhl Theoret Chem, D-44780 Bochum, Germany
[2] Ecole Normale Super, Dept Chem, F-75231 Paris, France
来源
JOURNAL OF CHEMICAL PHYSICS | 2010年 / 133卷 / 11期
关键词
ab initio calculations; infrared spectra; molecular biophysics; molecular dynamics method; molecular moments; proteins; solvation; vibrational states; Wannier functions; water; DENSITY-FUNCTIONAL THEORY; INFRARED-SPECTRUM; 1ST PRINCIPLES; LIQUID WATER; AMINO-ACIDS; SIMULATIONS; ALANINE; ZWITTERION; SIGNATURES; HYDRATION;
D O I
10.1063/1.3481576
中图分类号
O64 [物理化学(理论化学)、化学物理学];
学科分类号
070304 ; 081704 ;
摘要
An aqueous glycine solution is studied with ab initio molecular dynamics to investigate the structural aspects of the different solvation shells within the zwitterion and their impact on the infrared spectrum. The individual contributions to the total IR spectrum from glycine and solvation water are decomposed systematically using the standard schemes in terms of maximally localized Wannier orbitals to define approximate molecular dipole moments in solution. The IR spectra of the aqueous solution and of the solvated zwitterionic glycine molecule itself are compared to those stemming from neutral glycine in the gas phase and a virtual "isolated" zwitterionic glycine molecule vertically transferred from solution into vacuum. Furthermore, electronic polarization effects due to solute-solvent coupling are discussed in detail for the solute and for the interfacial solvent molecules based on dipole moment distribution functions. (C) 2010 American Institute of Physics. [doi:10.1063/1.3481576]
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页数:10
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