A set of mainshock and aftershock data following the Chamoli earthquake of March 29, 1999, recorded at a single station viz, Copeshwar, has been studied. Particularly, the utility of the use of aftershock/weak motion data for site characterisation in seismic microzonation studies is investigated. The analysis of aftershock and mainshock data indicates that the spectral shape and amplification is quite different during the mainshock and the aftershock. This, in turn, implies that the use of weak motion/aftershock records may lead to erroneous conclusions regarding the expected ground motion during a strong earthquake. Further, it has been shown that the site characteristics estimated from H/V ratios are not stable in the near field conditions, even for weak motion data.