Ligand-dependent transcription by the nuclear receptor glucocorticoid receptor (GR) is mediated by interactions with coregulators. The role of these interactions in determining selective binding of GR to regulatory elements remains unclear. Recent findings indicate that a large fraction of genomic GR binding coincides with chromatin that is accessible prior to hormone treatment, suggesting that receptor binding is dictated by proteins that maintain chromatin in an open state. Combining DNasel accessibility and chromatin immunoprecipitation with high-throughput sequencing, we identify the activator protein 1 (AP1) as a major partner for productive GR-chromatin interactions. AP1 is critical for GR-regulated transcription and recruitment to co-occupied regulatory elements, illustrating an extensive AP1-GR interaction network. Importantly, the maintenance of baseline chromatin accessibility facilitates GR recruitment and is dependent on AP1 binding. We propose a model in which the basal occupancy of transcription factors acts to prime chromatin and direct inducible transcription factors to select regions in the genome.
机构:Univ Manchester, Endocrine Sci Res Grp, Clin Res Div 2, Manchester M13 9PT, Lancs, England
Brogan, IJ
Murray, IA
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机构:Univ Manchester, Endocrine Sci Res Grp, Clin Res Div 2, Manchester M13 9PT, Lancs, England
Murray, IA
Cerillo, G
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机构:Univ Manchester, Endocrine Sci Res Grp, Clin Res Div 2, Manchester M13 9PT, Lancs, England
Cerillo, G
Needham, M
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机构:Univ Manchester, Endocrine Sci Res Grp, Clin Res Div 2, Manchester M13 9PT, Lancs, England
Needham, M
White, A
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机构:Univ Manchester, Endocrine Sci Res Grp, Clin Res Div 2, Manchester M13 9PT, Lancs, England
White, A
Davis, JRE
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Univ Manchester, Endocrine Sci Res Grp, Clin Res Div 2, Manchester M13 9PT, Lancs, EnglandUniv Manchester, Endocrine Sci Res Grp, Clin Res Div 2, Manchester M13 9PT, Lancs, England
机构:
Stanford Univ, Dept Stat, Stanford, CA 94305 USAStanford Univ, Dept Stat, Stanford, CA 94305 USA
Zamanighomi, Mahdi
Lin, Zhixiang
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Stanford Univ, Dept Stat, Stanford, CA 94305 USAStanford Univ, Dept Stat, Stanford, CA 94305 USA
Lin, Zhixiang
Wang, Yong
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Chinese Acad Sci, Acad Math & Syst Sci, Natl Ctr Math & Interdisciplinary Sci, Beijing 100190, Peoples R ChinaStanford Univ, Dept Stat, Stanford, CA 94305 USA
Wang, Yong
Jiang, Rui
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Tsinghua Univ, TNLIST, Dept Automat, Bioinformat Div,MOE Key Lab Bioinformat, Beijing 100084, Peoples R China
Tsinghua Univ, Ctr Synthet & Syst Biol, Dept Automat, Beijing 100084, Peoples R ChinaStanford Univ, Dept Stat, Stanford, CA 94305 USA
机构:
Univ Wisconsin, Sch Med & Publ Hlth, Dept Biomol Chem, Madison, WI 53706 USAUniv Wisconsin, Sch Med & Publ Hlth, Dept Biomol Chem, Madison, WI 53706 USA
Schulz, Katharine N.
Bondra, Eliana R.
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Univ Wisconsin, Sch Med & Publ Hlth, Dept Biomol Chem, Madison, WI 53706 USAUniv Wisconsin, Sch Med & Publ Hlth, Dept Biomol Chem, Madison, WI 53706 USA
Bondra, Eliana R.
Moshe, Arbel
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Hebrew Univ Jerusalem, Sch Comp Sci & Engn, IL-91904 Jerusalem, IsraelUniv Wisconsin, Sch Med & Publ Hlth, Dept Biomol Chem, Madison, WI 53706 USA
Moshe, Arbel
Villalta, Jacqueline E.
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Univ Calif Berkeley, Howard Hughes Med Inst, Berkeley, CA 94720 USAUniv Wisconsin, Sch Med & Publ Hlth, Dept Biomol Chem, Madison, WI 53706 USA
Villalta, Jacqueline E.
Lieb, Jason D.
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Univ Chicago, Dept Human Genet, Chicago, IL 60637 USAUniv Wisconsin, Sch Med & Publ Hlth, Dept Biomol Chem, Madison, WI 53706 USA
Lieb, Jason D.
Kaplan, Tommy
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Hebrew Univ Jerusalem, Sch Comp Sci & Engn, IL-91904 Jerusalem, IsraelUniv Wisconsin, Sch Med & Publ Hlth, Dept Biomol Chem, Madison, WI 53706 USA
Kaplan, Tommy
McKay, Daniel J.
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Univ N Carolina, Dept Biol, Chapel Hill, NC 27599 USA
Univ N Carolina, Dept Genet, Chapel Hill, NC 27599 USAUniv Wisconsin, Sch Med & Publ Hlth, Dept Biomol Chem, Madison, WI 53706 USA
McKay, Daniel J.
Harrison, Melissa M.
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Univ Wisconsin, Sch Med & Publ Hlth, Dept Biomol Chem, Madison, WI 53706 USAUniv Wisconsin, Sch Med & Publ Hlth, Dept Biomol Chem, Madison, WI 53706 USA