Improved Macaca fascicularis gene annotation reveals evolution of gene expression profiles in multiple tissues

被引:5
|
作者
Tan, Tao [1 ,11 ]
Xia, Lin [2 ,3 ]
Tu, Kailing [2 ,3 ]
Tang, Jie [2 ,3 ]
Yin, Senlin [2 ,3 ]
Dai, Lunzhi [2 ,3 ,5 ,6 ]
Lei, Peng [2 ,3 ,7 ]
Dong, Biao [2 ,3 ,8 ]
Hu, Hongbo [2 ,3 ,9 ]
Fan, Yong [10 ]
Yu, Yang [1 ]
Xie, Dan [2 ,3 ,4 ]
机构
[1] Peking Univ, Dept Obstet & Gynecol, Hosp 3, Beijing, Peoples R China
[2] Sichuan Univ, West China Hosp, State Key Lab Biotherapy, Chengdu, Sichuan, Peoples R China
[3] Sichuan Univ, West China Hosp, Collaborat Innovat Ctr Biotherapy, Chengdu, Sichuan, Peoples R China
[4] Sichuan Univ, W China Hosp, Ctr Precis Med, Chengdu, Sichuan, Peoples R China
[5] Sichuan Univ, West China Hosp, Lab PTM, Chengdu, Sichuan, Peoples R China
[6] Sichuan Univ, West China Hosp, Dept Gen Practice, Chengdu, Sichuan, Peoples R China
[7] Sichuan Univ, West China Sch Basic Med Sci & Forens Med, Chengdu, Sichuan, Peoples R China
[8] Sichuan Univ, West China Hosp, Natl Clin Res Ctr Geriatr, Chengdu, Sichuan, Peoples R China
[9] Sichuan Univ, West China Hosp, Dept Rheumatol & Immunol, Chengdu, Sichuan, Peoples R China
[10] Guangzhou Med Univ, Key Lab Major Obstet Dis Guangdong Prov, Affiliated Hosp 3, Guangzhou, Guangdong, Peoples R China
[11] Kunming Univ Sci & Technol, Inst Primate Translat Med, Yunnan Key Lab Primate Biomed Res, Kunming 650500, Yunnan, Peoples R China
来源
BMC GENOMICS | 2018年 / 19卷
基金
中国国家自然科学基金;
关键词
Crab-eating macaque; Evolution; Gene regulation; EMBRYONIC STEM-CELLS; GENOME ANNOTATION; CYNOMOLGUS; TRANSCRIPTOME; GENERATION; MACAQUES; MONKEY; RECONSTRUCTION; TRANSMISSION; EUKARYOTES;
D O I
10.1186/s12864-018-5183-y
中图分类号
Q81 [生物工程学(生物技术)]; Q93 [微生物学];
学科分类号
071005 ; 0836 ; 090102 ; 100705 ;
摘要
BackgroundsMacaca fascicularis (M. fascicularis) is a primate model organism that played important role in studying human health. It is vital to better understand the similarity and differences of gene regulation between M. fascicularis and human. Current comparative study of gene regulation between the two species are limited by low quality of gene annotation and lack of regulatory element data on M. fascicularis genome.ResultsIn this study, we improved the M. fascicularis gene annotation with 57 gene expression data from multiple tissues and, more importantly, a manual curation procedure. The new annotation enabled us to map gene expression and identify gene location more accurately.ConclusionsComparing with human gene expression data from the same cell types, we characterized the evolution of expression patterns of homologous genes.
引用
收藏
页数:12
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