Rapid Identification of Bio-Molecules Applied for Detection of Biosecurity Agents Using Rolling Circle Amplification

被引:39
|
作者
Goransson, Jenny [1 ,3 ]
Ke, Rongqin [1 ]
Nong, Rachel Yuan [1 ]
Howell, W. Mathias [1 ]
Karman, Anna [2 ,3 ]
Grawe, Jan [3 ]
Stenberg, Johan [3 ]
Granberg, Malin [4 ]
Elgh, Magnus [3 ]
Herthnek, David [1 ]
Wikstrom, Per [4 ]
Jarvius, Jonas [1 ,3 ]
Nilsson, Mats [1 ]
机构
[1] Uppsala Univ, SciLifeLab, Dept Immunol Genet & Pathol, Rudbeck Lab, Uppsala, Sweden
[2] Dag Hammarskjolds Vag, Olink AB, Uppsala, Sweden
[3] Dag Hammarskjolds, Q Linea AB, Uppsala, Sweden
[4] Swedish Def Res Agcy, Umea, Sweden
来源
PLOS ONE | 2012年 / 7卷 / 02期
基金
瑞典研究理事会;
关键词
BACILLUS-ANTHRACIS; FRANCISELLA-TULARENSIS; PROXIMITY LIGATION; MAGNETIC BIOSENSOR; PROTEIN-DETECTION; YERSINIA-PESTIS; PADLOCK PROBES; IN-SITU; ASSAYS; PCR;
D O I
10.1371/journal.pone.0031068
中图分类号
O [数理科学和化学]; P [天文学、地球科学]; Q [生物科学]; N [自然科学总论];
学科分类号
07 ; 0710 ; 09 ;
摘要
Detection and identification of pathogens in environmental samples for biosecurity applications are challenging due to the strict requirements on specificity, sensitivity and time. We have developed a concept for quick, specific and sensitive pathogen identification in environmental samples. Target identification is realized by padlock- and proximity probing, and reacted probes are amplified by RCA (rolling-circle amplification). The individual RCA products are labeled by fluorescence and enumerated by an instrument, developed for sensitive and rapid digital analysis. The concept is demonstrated by identification of simili biowarfare agents for bacteria (Escherichia coli and Pantoea agglomerans) and spores (Bacillus atrophaeus) released in field.
引用
收藏
页数:9
相关论文
共 50 条
  • [31] Rapid and sensitive detection of Karlodinium veneficum by a novel double-nick rolling circle amplification
    Fuguo Liu
    Chunyun Zhang
    Huiwen Zheng
    Yuchen Yang
    Diya Zang
    Yuanyuan Wang
    Guofu Chen
    Environmental Science and Pollution Research, 2021, 28 : 42570 - 42582
  • [32] Rapid and sensitive detection of Karlodinium veneficum by a novel double-nick rolling circle amplification
    Liu, Fuguo
    Zhang, Chunyun
    Zheng, Huiwen
    Yang, Yuchen
    Zang, Diya
    Wang, Yuanyuan
    Chen, Guofu
    ENVIRONMENTAL SCIENCE AND POLLUTION RESEARCH, 2021, 28 (31) : 42570 - 42582
  • [33] Hyperbranched rolling circle amplification as a rapid and sensitive method for species identification within the Cryptococcus species complex
    Kaocharoen, Sirada
    Wang, Bin
    Tsui, Kin Ming
    Trilles, Luciana
    Kong, Fanrong
    Meyer, Wieland
    ELECTROPHORESIS, 2008, 29 (15) : 3183 - 3191
  • [34] Isothermal and rapid detection of pathogenic microorganisms using a nano-rolling circle amplification-surface plasmon resonance biosensor
    Shi, Dachuan
    Huang, Junfu
    Chuai, Zhengran
    Chen, Dong
    Zhu, Xiaoyan
    Wang, Huan
    Peng, Jia
    Wu, Haiyan
    Huang, Qing
    Fu, Weiling
    BIOSENSORS & BIOELECTRONICS, 2014, 62 : 280 - 287
  • [35] Sensitive detection of polynucleotide kinase using rolling circle amplification-induced chemiluminescence
    Tang, Wei
    Zhu, Guichi
    Zhang, Chun-Yang
    CHEMICAL COMMUNICATIONS, 2014, 50 (36) : 4733 - 4735
  • [36] An aptamer assay using rolling circle amplification coupled with thrombin catalysis for protein detection
    Limin Guo
    Lihua Hao
    Qiang Zhao
    Analytical and Bioanalytical Chemistry, 2016, 408 : 4715 - 4722
  • [37] DETECTION OF HBV CCCDNA IN HEPATOCYTES USING ROLLING CIRCLE AMPLIFICATION COMBINED WITH IN SITU PCR
    Zhong, Yanwei
    Zhu, Shishu
    Zhang, Hongfei
    Zhou, Dongqing
    Sun, Yanling
    Han, Jiaqi
    Wang, Yan
    Gan, Yu
    HEPATOLOGY, 2011, 54 : 1073A - 1074A
  • [38] Development of the Saltatory Rolling Circle Amplification Assay for Rapid and Visual Detection of Alicyclobacillus acidoterrestris in Apple Juice
    Yuan, Ning
    Zhang, Yunzhe
    Xu, Hui
    Zhou, Zhijun
    Lu, Xin
    Chen, Tingting
    Yang, Qian
    Tan, Jianxin
    Zhang, Wei
    JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY, 2020, 68 (15) : 4538 - 4545
  • [39] An aptamer assay using rolling circle amplification coupled with thrombin catalysis for protein detection
    Guo, Limin
    Hao, Lihua
    Zhao, Qiang
    ANALYTICAL AND BIOANALYTICAL CHEMISTRY, 2016, 408 (17) : 4715 - 4722
  • [40] Saltatory rolling circle amplification assay coupled with photosensitization method for rapid and sensitive detection of Salmonella in food
    Wang, Huibin
    Yang, Qian
    Xu, Hui
    Zhang, Yunzhe
    Lu, Xin
    Zhang, Wei
    EUROPEAN FOOD RESEARCH AND TECHNOLOGY, 2023, 249 (08) : 2067 - 2075