BioImageXD: an open, general-purpose and high-throughput image-processing platform

被引：0

作者：

Kankaanpaa, Pasi ^{[1
]}

Paavolainen, Lassi ^{[2
,3
]}

Tiitta, Silja ^{[1
]}

Karjalainen, Mikko ^{[2
,3
]}

Paivarinne, Joacim ^{[1
]}

Nieminen, Jonna ^{[1
]}

Marjomaki, Varpu ^{[2
,3
]}

Heino, Jyrki ^{[1
]}

White, Daniel J. ^{[2
,3
,4
]}

机构：

[1] Univ Turku, Dept Biochem & Food Chem, Turku, Finland

[2] Univ Jyvaskyla, Dept Biol & Environm Sci, Jyvaskyla, Finland

[3] Univ Jyvaskyla, Nanosci Ctr, Jyvaskyla, Finland

[4] Max Planck Inst Mol Cell Biol & Genet, Dresden, Germany

来源：

NATURE METHODS | 2012年 / 9卷 / 07期

基金：

芬兰科学院;

关键词：

QUANTITATIVE-ANALYSIS; COLOCALIZATION; VISUALIZATION; MICROSCOPY; INFORMATICS; DOMAIN; TOOLS;

D O I：

10.1038/NMETH.2047

中图分类号：

Q5 [生物化学];

学科分类号：

071010 ; 081704 ;

摘要：

BioImageXD puts open-source computer science tools for three-dimensional visualization and analysis into the hands of all researchers, through a user-friendly graphical interface tuned to the needs of biologists. BioImageXD has no restrictive licenses or undisclosed algorithms and enables publication of precise, reproducible and modifiable workflows. It allows simple construction of processing pipelines and should enable biologists to perform challenging analyses of complex processes. We demonstrate its performance in a study of integrin clustering in response to selected inhibitors.

引用

页码：683 / 689

页数：7

共 50 条

[21] CREATING THE GENERAL-PURPOSE IMAGE COMPUTER
SMITH, AR
[J]. COMPUTER GRAPHICS WORLD, 1986, 9 (06) : 63 - 64
[22] Multimodal imaging and high-throughput image-processing for drug screening on living organisms on-chip
Migliozzi, Daniel
Cornaglia, Matteo
Mouchiroud, Laurent
Uhlmann, Virginie
Unser, Michael A.
Auwerx, Johan
Gijs, Martin A. M.
[J]. JOURNAL OF BIOMEDICAL OPTICS, 2019, 24 (02)
[23] A Flexible and General-Purpose Platform for Heterogeneous Computing
Garcia-Hernandez, Jose Juan
Morales-Sandoval, Miguel
Elizondo-Rodriguez, Erick
[J]. COMPUTATION, 2023, 11 (05)
[24] A General-purpose Crowdsourcing Platform for Mobile Devices
Amato, Ariel
Lumbreras, Felipe
Sappa, Angel D.
[J]. PROCEEDINGS OF THE 2014 9TH INTERNATIONAL CONFERENCE ON COMPUTER VISION, THEORY AND APPLICATIONS (VISAPP 2014), VOL 3, 2014, : 211 - 215
[25] PAGAN: Platform for Audiovisual General-purpose ANnotation
Melhart, David
Liapis, Antonio
Yannakakis, Georgios N.
[J]. 2019 8TH INTERNATIONAL CONFERENCE ON AFFECTIVE COMPUTING AND INTELLIGENT INTERACTION WORKSHOPS AND DEMOS (ACIIW), 2019, : 75 - 76
[26] Performance of image and video processing with general-purpose processors and media ISA extensions
Ranganathan, P
Adve, S
Jouppi, NP
[J]. PROCEEDINGS OF THE 26TH INTERNATIONAL SYMPOSIUM ON COMPUTER ARCHITECTURE, 1999, : 124 - 135
[27] Multidimensional quantification of subcellular morphology of Saccharomyces cerevisiae using CalMorph, the high-throughput image-processing program
Negishi, Takahiro
Nogami, Satoru
Ohya, Yoshikazu
[J]. JOURNAL OF BIOTECHNOLOGY, 2009, 141 (3-4) : 109 - 117
[28] IMAGE-PROCESSING ON OPEN SYSTEMS
GREVE, CW
MOLANDER, CW
GORDON, DK
[J]. PHOTOGRAMMETRIC ENGINEERING AND REMOTE SENSING, 1992, 58 (01): : 85 - 89
[29] GENERAL-PURPOSE SIMULATOR OF MINERAL PROCESSING OPERATIONS
MCKEE, D
[J]. CIM BULLETIN, 1985, 78 (878): : 86 - 86
[30] General-purpose computing on GPU Pixel processing
Ockay, Milos
[J]. 2017 COMMUNICATION AND INFORMATION TECHNOLOGIES (KIT), 2017, : 115 - 118

← 1 2 3 4 5 →