BioImageXD: an open, general-purpose and high-throughput image-processing platform

被引：0

作者：

Kankaanpaa, Pasi ^{[1
]}

Paavolainen, Lassi ^{[2
,3
]}

Tiitta, Silja ^{[1
]}

Karjalainen, Mikko ^{[2
,3
]}

Paivarinne, Joacim ^{[1
]}

Nieminen, Jonna ^{[1
]}

Marjomaki, Varpu ^{[2
,3
]}

Heino, Jyrki ^{[1
]}

White, Daniel J. ^{[2
,3
,4
]}

机构：

[1] Univ Turku, Dept Biochem & Food Chem, Turku, Finland

[2] Univ Jyvaskyla, Dept Biol & Environm Sci, Jyvaskyla, Finland

[3] Univ Jyvaskyla, Nanosci Ctr, Jyvaskyla, Finland

[4] Max Planck Inst Mol Cell Biol & Genet, Dresden, Germany

来源：

NATURE METHODS | 2012年 / 9卷 / 07期

基金：

芬兰科学院;

关键词：

QUANTITATIVE-ANALYSIS; COLOCALIZATION; VISUALIZATION; MICROSCOPY; INFORMATICS; DOMAIN; TOOLS;

D O I：

10.1038/NMETH.2047

中图分类号：

Q5 [生物化学];

学科分类号：

071010 ; 081704 ;

摘要：

BioImageXD puts open-source computer science tools for three-dimensional visualization and analysis into the hands of all researchers, through a user-friendly graphical interface tuned to the needs of biologists. BioImageXD has no restrictive licenses or undisclosed algorithms and enables publication of precise, reproducible and modifiable workflows. It allows simple construction of processing pipelines and should enable biologists to perform challenging analyses of complex processes. We demonstrate its performance in a study of integrin clustering in response to selected inhibitors.

引用

页码：683 / 689

页数：7

共 50 条

[1] BioImageXD: an open, general-purpose and high-throughput image-processing platform
Pasi Kankaanpää
Lassi Paavolainen
Silja Tiitta
Mikko Karjalainen
Joacim Päivärinne
Jonna Nieminen
Varpu Marjomäki
Jyrki Heino
Daniel J White
[J]. Nature Methods, 2012, 9 (7) : 683 - 689
[2] IMAGE-PROCESSING IN A GENERAL-PURPOSE MICROCOMPUTER
RUSS, JC
RUSS, JC
[J]. JOURNAL OF MICROSCOPY-OXFORD, 1984, 135 (JUL): : 89 - 102
[3] A GENERAL-PURPOSE EXPERT SYSTEM FOR IMAGE-PROCESSING
SCHOWENGERDT, RA
WANG, HL
[J]. PHOTOGRAMMETRIC ENGINEERING AND REMOTE SENSING, 1989, 55 (09): : 1277 - 1284
[4] A fast general-purpose clustering algorithm based on FPGAs for high-throughput data processing
Annovi, A.
Beretta, M.
[J]. NUCLEAR INSTRUMENTS & METHODS IN PHYSICS RESEARCH SECTION A-ACCELERATORS SPECTROMETERS DETECTORS AND ASSOCIATED EQUIPMENT, 2010, 617 (1-3): : 254 - 257
[5] Image-processing methods on general-purpose graphics processors with parallel architecture
Filatov, V. I.
[J]. JOURNAL OF OPTICAL TECHNOLOGY, 2012, 79 (11) : 716 - 720
[6] FAST COMPUTING MEDIAN FILTERS ON GENERAL-PURPOSE IMAGE-PROCESSING SYSTEMS
RUTTIMANN, UE
WEBBER, RL
[J]. OPTICAL ENGINEERING, 1986, 25 (09) : 1064 - 1067
[7] VIPER - A GENERAL-PURPOSE DIGITAL IMAGE-PROCESSING SYSTEM APPLIED TO VIDEO MICROSCOPY
BRUNNER, M
ITTNER, W
[J]. COMPUTER METHODS AND PROGRAMS IN BIOMEDICINE, 1988, 26 (02) : 167 - 181
[8] 3-DIMENSIONAL SURFACE RECONSTRUCTIONS USING A GENERAL-PURPOSE IMAGE-PROCESSING SYSTEM
HOFFMEISTER, JW
RINEHART, GC
VANNIER, MW
[J]. COMPUTERIZED MEDICAL IMAGING AND GRAPHICS, 1990, 14 (01) : 35 - 42
[9] GENERAL-PURPOSE COMPUTERIZED DISPLAY AND ANALYSIS SYSTEM FOR IMAGE-PROCESSING IN NUCLEAR-MEDICINE
RAM, G
[J]. COMPUTER PROGRAMS IN BIOMEDICINE, 1979, 10 (03): : 245 - 260
[10] Image Harvest: an open-source platform for high-throughput plant image processing and analysis
Knecht, Avi C.
Campbell, Malachy T.
Caprez, Adam
Swanson, David R.
Walia, Harkamal
[J]. JOURNAL OF EXPERIMENTAL BOTANY, 2016, 67 (11) : 3587 - 3599

← 1 2 3 4 5 →