Database Resources of the BIG Data Center in 2018

被引:101
|
作者
Xu, Xingjian [1 ,2 ,3 ,5 ]
Hao, Lili [1 ,2 ]
Zhu, Junwei [1 ]
Zhou, Qing [1 ,3 ]
Song, Fuhai [2 ,3 ]
Chen, Tingting [1 ]
Zhang, Sisi [1 ]
Dong, Lili [1 ]
Lan, Li [1 ]
Wang, Yanqing [1 ]
Liang, Fang [1 ]
Cao, Jiabao [1 ,2 ,3 ]
Liu, Fang [5 ]
Liu, Lin [1 ,2 ,3 ]
Wang, Fan [1 ,2 ,3 ]
Ma, Yingke [1 ,2 ]
Zhang, Lijuan [1 ,2 ,3 ]
Chen, Meili [1 ,2 ]
Tian, Dongmei [1 ]
Li, Cuiping [1 ]
Du, Zhenglin [1 ]
Yuan, Na [1 ]
Zeng, Jingyao [1 ]
Zhang, Zhewen [1 ,2 ]
Wang, Jinyue [1 ,2 ,3 ]
Shi, Shuo [1 ,2 ,3 ]
Zhang, Yadong [1 ,2 ,3 ]
Pan, Mengyu [1 ,2 ,3 ]
Tang, Bixia [1 ,2 ,3 ]
Zou, Dong [1 ,2 ]
Song, Shuhui [1 ]
Sang, Jian [1 ,2 ,3 ]
Xia, Lin [1 ,2 ,3 ]
Wang, Zhennan [3 ,6 ]
Li, Man [1 ,2 ,3 ]
Niu, Guangyi [1 ,2 ,3 ]
Zhang, Yang [1 ,2 ,3 ]
Sheng, Xin [1 ,2 ,3 ]
Lu, Mingming [1 ,2 ,3 ]
Wang, Qi [1 ,2 ,3 ]
Liang, Fang [1 ]
Li, Mengwei [1 ,2 ,3 ]
Sun, Shixiang [1 ,2 ,3 ,14 ]
Li, Rujiao [1 ]
Yu, Chunlei [1 ,2 ,3 ]
Wang, Guangyu [1 ,2 ,3 ,15 ]
Li, Man [1 ,2 ,3 ]
Yin, Hongyan [1 ,2 ,3 ,16 ]
Ma, Lina [1 ,2 ]
Chen, Huanxin [1 ]
机构
[1] Chinese Acad Sci, Beijing Inst Genom, BIG Data Ctr, Beijing 100101, Peoples R China
[2] Chinese Acad Sci, Beijing Inst Genom, CAS Key Lab Genome Sci & Informat, Beijing 100101, Peoples R China
[3] Univ Chinese Acad Sci, Beijing 100049, Peoples R China
[4] Fudan Univ, Collaborat Innovat Ctr Genet & Dev, Shanghai 200438, Peoples R China
[5] Inner Mongolia Normal Univ, Coll Comp Sci Technol, Hohhot 010010, Inner Mongolia, Peoples R China
[6] Chinese Acad Sci, Inst Zool, State Key Lab Integrated Management Pest Insects, Beijing 100101, Peoples R China
[7] Huazhong Univ Sci & Technol, Coll Life Sci & Technol, Key Lab Mol Biophys, Minist Educ, Wuhan 430074, Hubei, Peoples R China
[8] Huazhong Univ Sci & Technol, Collaborat Innovat Ctr Biomed Engn, Wuhan 430074, Hubei, Peoples R China
[9] Tianjin Univ, Dept Phys, Tianjin 300072, Peoples R China
[10] Tianjin Univ, Minist Educ, Key Lab Syst Bioengn, Tianjin 300072, Peoples R China
[11] Tianjin Univ, SynBio Res Platform, Collaborat Innovat Ctr Chem Sci & Engn Tianjin, Tianjin 300072, Peoples R China
[12] Peking Univ, Sch Basic Med Sci, MOE Key Lab Cardiovasc Sci, Dept Biomed Informat, Beijing 100191, Peoples R China
[13] Navy Gen Hosp PLA, Cent Lab, Beijing 100191, Peoples R China
[14] Albert Einstein Coll Med, Dept Genet, Bronx, NY 10461 USA
[15] Baylor Coll Med, Dept Mol & Cellular Biol, Houston, TX 77030 USA
[16] Hainan Univ, Inst Trop Agr & Forestry, Hainan Key Lab Sustainable Utilizat Trop Bioresou, Haikou 570228, Hainan, Peoples R China
基金
中国国家自然科学基金;
关键词
GENE-EXPRESSION; KNOWLEDGE; CURATION; CATALOG; RICE;
D O I
10.1093/nar/gkx897
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
The BIG Data Center at Beijing Institute of Genomics (BIG) of the Chinese Academy of Sciences provides freely open access to a suite of database resources in support of worldwide research activities in both academia and industry. With the vast amounts of omics data generated at ever-greater scales and rates, the BIG Data Center is continually expanding, updating and enriching its core database resources through big-data integration and value-added curation, including BioCode (a repository archiving bioinformatics tool codes), BioProject (a biological project library), BioSample (a biological sample library), Genome Sequence Archive (GSA, a data repository for archiving raw sequence reads), Genome Warehouse (GWH, a centralized resource housing genome-scale data), Genome Variation Map (GVM, a public repository of genome variations), Gene Expression Nebulas (GEN, a database of gene expression profiles based on RNA-Seq data), Methylation Bank (MethBank, an integrated databank of DNA methylomes), and Science Wikis (a series of biological knowledge wikis for community annotations). In addition, three featured web services are provided, viz., BIG Search (search as a service; a scalable inter-domain text search engine), BIG SSO (single sign-on as a service; a user access control system to gain access to multiple independent systems with a single ID and password) and Gsub (submission as a service; a unified submission service for all relevant resources). All of these resources are publicly accessible through the home page of the BIG Data Center at http://bigd.big.ac.cn.
引用
收藏
页码:D14 / D20
页数:7
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