The supply and consumption of metabolites in living cells are catalyzed by enzymes. Here we consider two of the simplest schemes where one substrate is eliminated through Michaelis-Menten kinetics, and where two types of substrates are joined together by an enzyme. It is demonstrated how steady-state substrate concentrations can change ultrasensitively in response to changes in their supply rates and how this is coupled to slow relaxation back to steady state after a perturbation. In the one-substrate system, such near-critical behavior occurs when the supply rate approaches the maximal elimination rate, and in the two-substrate system it occurs when the rates of substrate supply are almost balanced. As systems that operate near criticality tend to display large random fluctuations, we also carried out a stochastic analysis using analytical approximations of master equations and compared the results with molecular-level Monte Carlo simulations. It was found that the significance, of random fluctuations was directly coupled to the steady-state sensitivity and that the two substrates can fluctuate greatly because they are anticorrelated in such a way that the product formation rate displays only small variation. Basic relations are highlighted and biological implications are discussed.
机构:
Scripps Institution of Oceanography, Univ. of California at San Diego, San Diego, CA 92093-0230, United States
Laboratoire de Physique, ENS Lyon, 46 Allée d'Italie, 69007 Lyon, FranceScripps Institution of Oceanography, Univ. of California at San Diego, San Diego, CA 92093-0230, United States
Dauxois, Thierry
Young, W.R.
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Scripps Institution of Oceanography, Univ. of California at San Diego, San Diego, CA 92093-0230, United StatesScripps Institution of Oceanography, Univ. of California at San Diego, San Diego, CA 92093-0230, United States
机构:
E China Normal Univ, Dept Chem, Shanghai Key Lab Green Chem & Green Proc, Shanghai 200062, Peoples R ChinaE China Normal Univ, Dept Chem, Shanghai Key Lab Green Chem & Green Proc, Shanghai 200062, Peoples R China
Duan Pei-Gao
Niu Yan-Lei
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E China Normal Univ, Dept Chem, Shanghai Key Lab Green Chem & Green Proc, Shanghai 200062, Peoples R ChinaE China Normal Univ, Dept Chem, Shanghai Key Lab Green Chem & Green Proc, Shanghai 200062, Peoples R China
Niu Yan-Lei
Wang Yuan-Yuan
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E China Normal Univ, Dept Chem, Shanghai Key Lab Green Chem & Green Proc, Shanghai 200062, Peoples R ChinaE China Normal Univ, Dept Chem, Shanghai Key Lab Green Chem & Green Proc, Shanghai 200062, Peoples R China
Wang Yuan-Yuan
Dai Li-Yi
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E China Normal Univ, Dept Chem, Shanghai Key Lab Green Chem & Green Proc, Shanghai 200062, Peoples R ChinaE China Normal Univ, Dept Chem, Shanghai Key Lab Green Chem & Green Proc, Shanghai 200062, Peoples R China
机构:
Ecole Normale Super, Dept Math & Applicat, F-75230 Paris 05, France
Univ Paris 11, Math Lab, F-91405 Orsay, FranceEcole Normale Super, Dept Math & Applicat, F-75230 Paris 05, France
Nolin, Pierre
ELECTRONIC JOURNAL OF PROBABILITY,
2008,
13
: 1562
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1623