Biological Random Walks: multi-omics integration for disease gene prioritization

被引:8
|
作者
Gentili, Michele [1 ]
Martini, Leonardo [1 ]
Sponziello, Marialuisa [2 ]
Becchetti, Luca [1 ]
机构
[1] Sapienza Univ Rome, Dept Comp Control & Management Engn Antonio Ruber, Rome, Italy
[2] Sapienza Univ Rome, Translat & Precis Med Dept, Rome, Italy
基金
欧洲研究理事会; 欧盟地平线“2020”;
关键词
NETWORK MEDICINE; NEXT-GENERATION; BREAST;
D O I
10.1093/bioinformatics/btac446
中图分类号
Q5 [生物化学];
学科分类号
071010 ; 081704 ;
摘要
Motivation: Over the past decade, network-based approaches have proven useful in identifying disease modules within the human interactome, often providing insights into key mechanisms and guiding the quest for therapeutic targets. This is all the more important, since experimental investigation of potential gene candidates is an expensive task, thus not always a feasible option. On the other hand, many sources of biological information exist beyond the interactome and an important research direction is the design of effective techniques for their integration. Results: In this work, we introduce the Biological Random Walks (BRW) approach for disease gene prioritization in the human interactome. The proposed framework leverages multiple biological sources within an integrated framework. We perform an extensive, comparative study of BRW's performance against well-established baselines.
引用
收藏
页码:4145 / 4152
页数:8
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