MSnbase-an R/Bioconductor package for isobaric tagged mass spectrometry data visualization, processing and quantitation

被引：226
|
作者：
Gatto, Laurent [1 ]
Lilley, Kathryn S. [1 ]
机构：
[1] Univ Cambridge, Cambridge Ctr Prote, Cambridge Syst Biol Ctr, Dept Biochem, Cambridge CB2 1QR, England
来源：
BIOINFORMATICS | 2012年 / 28卷 / 02期
基金：
英国生物技术与生命科学研究理事会;
关键词：
D O I：
10.1093/bioinformatics/btr645
中图分类号：
Q5 [生物化学];
学科分类号：
071010 ; 081704 ;
摘要：
MSnbase is an R/Bioconductor package for the analysis of quantitative proteomics experiments that use isobaric tagging. It provides an exploratory data analysis framework for reproducible research, allowing raw data import, quality control, visualization, data processing and quantitation. MSnbase allows direct integration of quantitative proteomics data with additional facilities for statistical analysis provided by the Bioconductor project.
引用
收藏
页码：288 / 289
页数：2
相关论文
共 42 条
  • [41] HaDeX: an R package and web-server for analysis of data from hydrogen-deuterium exchange mass spectrometry experiments
    Puchala, Weronika
    Burdukiewicz, Michal
    Kistowski, Michal
    Dabrowska, Katarzyna A.
    Badaczewska-Dawid, Aleksandra E.
    Cysewski, Dominik
    Dadlez, Michal
    BIOINFORMATICS, 2020, 36 (16) : 4516 - 4518
  • [42] Leveraging R (LevR) for fast processing of mass spectrometry data and machine learning: Applications analyzing fingerprints and glycopeptides
    Pfeifer, Leah D.
    Patabandige, Milani W.
    Desaire, Heather
    FRONTIERS IN ANALYTICAL SCIENCE, 2022, 2
12345