Microarray gene expression classification based on supervised learning and similarity measures

被引:3
|
作者
Liu, Qingzhong [1 ]
Sung, Andrew H. [1 ,2 ]
Xu, Jianyun [3 ]
Liu, Jianzhong [4 ]
Chen, Zhongxue [5 ]
机构
[1] New Mexico Inst Min & Technol, Dept Comp Sci, Socorro, NM 87801 USA
[2] New Mexico Inst Min & Technol, Inst Complex Addit Syst Anal, Socorro, NM 87801 USA
[3] Microsoft Corp, Redmond, WA 98052 USA
[4] Univ Delaware, Dept Chem & Biochem, Newark, DE 19716 USA
[5] So Methodist Univ, Dept Chem & Biochem, Dallas, TX 75275 USA
关键词
D O I
10.1109/ICSMC.2006.385116
中图分类号
TP [自动化技术、计算机技术];
学科分类号
0812 ;
摘要
Microarray gene expression data has high dimension and small samples, the gene selection is very important to the classification accuracy. In this paper, we present a scheme of recursive feature addition for microarray gene expression classification based on supervised learning and the similarity measure between chosen genes and candidates. In comparison with the well-known gene selection methods of T-TEST and SVM-RFE using different classifiers, our method, on the average, performs the best regarding the classification accuracy under different feature dimensions, the mean test accuracy and the highest test accuracy under the highest train accuracy, and the highest test accuracy in the experiments.
引用
收藏
页码:5094 / +
页数:3
相关论文
共 50 条
  • [31] Classification across gene expression microarray studies
    Buness, Andreas
    Ruschhaupt, Markus
    Kuner, Ruprecht
    Tresch, Achim
    BMC BIOINFORMATICS, 2009, 10
  • [32] On the classification of microarray gene-expression data
    Basford, Kaye E.
    McLachlan, Geoffrey J.
    Rathnayake, Suren I.
    BRIEFINGS IN BIOINFORMATICS, 2013, 14 (04) : 402 - 410
  • [33] Joint Semi-supervised Similarity Learning for Linear Classification
    Nicolae, Maria-Irina
    Gaussier, Eric
    Habrard, Amaury
    Sebban, Marc
    MACHINE LEARNING AND KNOWLEDGE DISCOVERY IN DATABASES, ECML PKDD 2015, PT I, 2015, 9284 : 594 - 609
  • [34] Spatial clustering based gene selection for gene expression analysis in microarray data classification
    Dhas, P. Edwin
    Lalitha, S.
    Govindaraj, Annalakshmi
    Jyoshna, B.
    AUTOMATIKA, 2024, 65 (01) : 152 - 158
  • [35] Supervised learning is an accurate method for network-based gene classification
    Liu, Renming
    Mancuso, Christopher A.
    Yannakopoulos, Anna
    Johnson, Kayla A.
    Krishnan, Arjun
    BIOINFORMATICS, 2020, 36 (11) : 3457 - 3465
  • [36] An Ensemble Filtering and Supervised Clustering based Informative Gene Selection Algorithm in Microarray Gene Expression Data
    Bose, Shilpi
    Das, Chandra
    Banerjee, Abhik
    Chattopadhyay, Matangini
    Chattopadhyay, Samiran
    2020 4TH INTERNATIONAL CONFERENCE ON COMPUTATIONAL INTELLIGENCE AND NETWORKS (CINE 2020), 2020,
  • [37] Supervised learning of similarity measures for content-based. 3D model retrieval
    Laga, Hamid
    Nakajima, Masayuki
    LARGE-SCALE KNOWLEDGE RESOURCES: CONSTRUCTION AND APPLICATION, 2008, 4938 : 210 - +
  • [38] Classification of Microarray Gene Expression Data using Associative Classification
    Alagukumar, S.
    Lawrance, R.
    2016 INTERNATIONAL CONFERENCE ON COMPUTING TECHNOLOGIES AND INTELLIGENT DATA ENGINEERING (ICCTIDE'16), 2016,
  • [39] Similarity searching in image retrieval with statistical distance measures and supervised learning
    Rahman, MM
    Bhattacharya, P
    Desai, BC
    PATTERN RECOGNITION AND DATA MINING, PT 1, PROCEEDINGS, 2005, 3686 : 315 - 324
  • [40] Band-based similarity indices for gene expression classification and clustering
    Aurora Torrente
    Scientific Reports, 11