The distribution of riparian vegetation in relation to channel morphology is poorly understood in canyon rivers, which are characterized by in-channel fluvial sediment deposits rather than flood plains. This study focuses on vegetation and sandbar characteristics in two reaches of the lower Little Colorado River canyon in Arizona-one reach with ephemeral flow from the watershed, and another with perennial baseflow from a spring. Both reaches have been colonized by the exotic Tamarix chinensis, a riparian species known for its geomorphic influence on river channels. On the basis of a sampling of 18 bars, results show that vegetation frequency and density is significantly greater in the perennial study reach. However, sandbar morphology variables do not differ between reaches, despite a significantly narrower and deeper ephemeral channel. Hydraulic calculations of flood depths and Pearson correlations between bar and vegetation variables indicate reach-specific bio-geomorphic relationships. In the ephemeral reach, higher bars are less affected by flood inundation, support older vegetation, and may be more stable habitat for vegetation. In the wider perennial reach where bars are lower and more expansive, vegetation patterns relate to bar size, Tamarix being most common on the largest bars. Overall results suggest that (1) vegetation variation relates to baseflow hydrology, (2) bar formation relates to high discharge events, and (3) vegetation patterns respond to, rather than influence, sandbar form in this canyon riparian system.