On the Effectiveness of Distances Measuring Protein Structure Similarity

被引:0
|
作者
Galgonek, Jakub [1 ]
Hokzsa, David [1 ]
机构
[1] Charles Univ Prague, Fac Math & Phys, Dept Software Engn, CR-18000 Prague, Czech Republic
关键词
Protein Structure; SCOP; TM-score;
D O I
10.1109/SISAP.2009.19
中图分类号
TP301 [理论、方法];
学科分类号
081202 ;
摘要
Determining similarity between two protein structures is one of the most fundamental problems in contemporary structural bioinformatics. With the increasing complexity of the measures, their effectiveness increases as well. However, other important observables, such as the degree of metric properties fulfilment, could rather deteriorate than improve. In this paper we introduce an effective measure and study its degree of metric properties fulfilment.
引用
收藏
页码:165 / 166
页数:2
相关论文
共 50 条
  • [31] MEASURING INTERMOLECULAR DISTANCES IN LIQUID
    BOGACHEV, NV
    BOKOV, OG
    ZHURNAL FIZICHESKOI KHIMII, 1974, 48 (02): : 286 - 289
  • [32] Measuring association with Wasserstein distances
    Wiesel, Johannes C. W.
    BERNOULLI, 2022, 28 (04) : 2816 - 2832
  • [33] Discovering novel protein-protein interactions by measuring the protein semantic similarity from the biomedical literature
    Chiang, Jung-Hsien
    Ju, Jiun-Huang
    JOURNAL OF BIOINFORMATICS AND COMPUTATIONAL BIOLOGY, 2014, 12 (06)
  • [34] Graph Similarity based on Graph Fourier Distances
    Lagunas, Eva
    Marques, Antonio G.
    Chatzinotas, Symeon
    Ottersten, Bjoern
    2018 26TH EUROPEAN SIGNAL PROCESSING CONFERENCE (EUSIPCO), 2018, : 877 - 881
  • [35] Similarity distances evaluation for query by example retrieval
    Da Rugna, J
    Konik, H
    INTERNET IMAGING IV, 2003, 5018 : 304 - 315
  • [36] A New Method for Measuring Topological Structure Similarity between Complex Trajectories
    Wang, Huimeng
    Du, Yunyan
    Yi, Jiawei
    Sun, Yong
    Liang, Fuyuan
    IEEE TRANSACTIONS ON KNOWLEDGE AND DATA ENGINEERING, 2019, 31 (10) : 1836 - 1848
  • [37] A novel microscopy method for measuring distances within single protein-DNA complexes
    Kapanidis, AN
    Laurence, TA
    Doose, S
    Mukhopadhyay, J
    Kortkhonjia, E
    Ebright, RH
    Weiss, S
    BIOPHYSICAL JOURNAL, 2002, 82 (01) : 49A - 50A
  • [38] Transportation distances and human perception of melodic similarity
    Typke, Rainer
    Wiering, Frans
    Veltkamp, Remco C.
    MUSICAE SCIENTIAE, 2007, : 153 - 181
  • [39] A Comparative Study of Different Distances for Similarity Estimation
    Li, Zhong
    Ding, Qiaolin
    Zhang, Weihua
    INTELLIGENT COMPUTING AND INFORMATION SCIENCE, PT I, 2011, 134 (0I): : 483 - 488
  • [40] Switching the pooling similarity distances: Mahalanobis for Euclidean
    Cunderlik, JM
    Burn, DH
    WATER RESOURCES RESEARCH, 2006, 42 (03)