MicroRNA profile analysis for discrimination of monozygotic twins using massively parallel sequencing and real-time PCR

被引:14
|
作者
Fang, Chen [1 ,4 ]
Zhao, Jing [2 ,3 ]
Liu, Xu [1 ,4 ]
Zhang, Jingjing [5 ]
Cao, Yunwang [6 ]
Yang, Yaran [2 ]
Yu, Chunrui [1 ,4 ]
Zhang, Xiaoli [1 ,4 ]
Qian, Jialin [1 ,4 ]
Liu, Wenli [1 ,4 ]
Wu, Huijuan [1 ,4 ,7 ]
Yan, Jiangwei [2 ,3 ,6 ]
机构
[1] Beijing Ctr Phys & Chem Anal, Beijing 100094, Peoples R China
[2] Chinese Acad Sci, Beijing Inst Genom, CAS Key Lab Genome Sci & Informat, Beijing 100010, Peoples R China
[3] Univ Chinese Acad Sci, Beijing 100049, Peoples R China
[4] Beijing Engn Technol Res Ctr Gene Sequencing & Ge, Beijing 100094, Peoples R China
[5] Beijing Huayan Judicial Authenticat Inst, Beijing 100192, Peoples R China
[6] Shanxi Med Univ, Sch Forens Med, Taiyuan 030001, Shanxi, Peoples R China
[7] Beijing Gene Med Lab Co Ltd, Beijing 100094, Peoples R China
基金
中国国家自然科学基金;
关键词
Monozygotic twins; microRNA; Massively parallel sequencing; Real-time polymerase chain reaction; CIRCULATING MICRORNAS; IDENTICAL-TWINS; DNA METHYLATION; QUANTITATIVE PCR; BODY-FLUIDS; RNA; BIOMARKERS; MARKERS; DISCORDANCE; SAMPLES;
D O I
10.1016/j.fsigen.2018.09.011
中图分类号
Q3 [遗传学];
学科分类号
071007 ; 090102 ;
摘要
In general, it is extremely problematic to discriminate between monozygotic twins (MZTs), who share the same genomic DNA sequence, using traditional DNA-based identification methods such as short tandem repeat profiling. MicroRNAs (miRNAs) have shown potential in forensic applications owing to their low molecular weight, abundant and tissue-specific expression. In this study, we utilized massively parallel sequencing technology to perform genome-wide profiling of miRNAs in the blood from four pairs of healthy MZTs. On average, 158 miRNAs were detected in each individual and 14% of which were differentially expressed within each pair of MZTs. The miRNAs with the most significant differences in expression between the twins were confirmed using real-time polymerase chain reaction. Our results demonstrated that miRNAs have potential for use as molecular markers in MZTs discrimination.
引用
收藏
页码:23 / 31
页数:9
相关论文
共 50 条
  • [31] Programming Real-time Autofocus on a Massively Parallel Reconfigurable Architecture using Occam-pi
    Zain-ul-Abdin
    Ahlander, Anders
    Svensson, Bertil
    2011 IEEE 19TH ANNUAL INTERNATIONAL SYMPOSIUM ON FIELD-PROGRAMMABLE CUSTOM COMPUTING MACHINES (FCCM), 2011, : 194 - 201
  • [32] Improved Pairwise Kinship Analysis Using Massively Parallel Sequencing
    Li, Ran
    Sun, Hongyu
    TRANSFUSION, 2018, 58 : 118A - 118A
  • [33] Facile means for quantifying microRNA expression by real-time PCR
    Shi, R
    Chiang, VL
    BIOTECHNIQUES, 2005, 39 (04) : 519 - 525
  • [34] Detection of microRNA Expression in Peritoneal Membrane of Rats Using Quantitative Real-time PCR
    Hirai, Keiji
    Yoshizawa, Hiromichi
    Imai, Toshimi
    Igarashi, Yusuke
    Hirahara, Ichiro
    Ookawara, Susumu
    Ishibashi, Kenichi
    Morishita, Yoshiyuki
    JOVE-JOURNAL OF VISUALIZED EXPERIMENTS, 2017, (124):
  • [35] Detection and biovar discrimination of Ureaplasma urealyticum by real-time PCR
    Yi, JY
    Yoon, BH
    Kim, EC
    MOLECULAR AND CELLULAR PROBES, 2005, 19 (04) : 255 - 260
  • [36] Detection and discrimination of WU/KI polyomaviruses by real-time PCR with melting curve analysis
    Payungporn, Sunchai
    Chieochansin, Thaweesak
    Thongmee, Chittima
    Panjaworayan, Nattanan
    Samransamruajkit, Rujipat
    Theamboolers, Apiradee
    Poovorawan, Yong
    JOURNAL OF VIROLOGICAL METHODS, 2008, 153 (01) : 70 - 73
  • [37] Real-time Scheduling of I/O Transfers for Massively Parallel Processor Arrays
    Walter, Dominik
    Witterauf, Michael
    Teich, Juergen
    2020 18TH ACM-IEEE INTERNATIONAL CONFERENCE ON FORMAL METHODS AND MODELS FOR SYSTEM DESIGN (MEMOCODE), 2020, : 104 - 114
  • [38] The evolution of a massively parallel vision system for real-time automotive image processing
    Broggi, A
    10TH INTERNATIONAL PARALLEL PROCESSING SYMPOSIUM - PROCEEDINGS OF IPPS '96, 1996, : 724 - 728
  • [39] Molecular Analysis of Fungal Populations in Patients with Onychomycosis Using Next Generation Sequencing (NGS) and Real-Time PCR
    Gustafson, E.
    Akinsanmi, I.
    Bennett, L.
    Bakotic, B.
    JOURNAL OF MOLECULAR DIAGNOSTICS, 2017, 19 (06): : 985 - 985
  • [40] Pairwise kinship analysis of 17 pedigrees using massively parallel sequencing
    Tao, Ruiyang
    Xu, Qiannan
    Wang, Shouyu
    Xia, Ruocheng
    Yang, Qi
    Chen, Anqi
    Qu, Yiling
    Lv, Yehui
    Zhang, Suhua
    Li, Chengtao
    FORENSIC SCIENCE INTERNATIONAL-GENETICS, 2022, 57