Minimum triplet covers of binary phylogenetic X-trees

被引:1
|
作者
Huber, K. T. [1 ]
Moulton, V. [1 ]
Steel, M. [2 ]
机构
[1] Univ East Anglia, Sch Comp Sci, Norwich, Norfolk, England
[2] Univ Canterbury, Biomath Res Ctr, Christchurch, New Zealand
关键词
Trees; Median vertex; 2-Trees; Shellability; Reconstruction;
D O I
10.1007/s00285-017-1117-6
中图分类号
Q [生物科学];
学科分类号
07 ; 0710 ; 09 ;
摘要
Trees with labelled leaves and with all other vertices of degree three play an important role in systematic biology and other areas of classification. A classical combinatorial result ensures that such trees can be uniquely reconstructed from the distances between the leaves (when the edges are given any strictly positive lengths). Moreover, a linear number of these pairwise distance values suffices to determine both the tree and its edge lengths. A natural set of pairs of leaves is provided by any 'triplet cover' of the tree (based on the fact that each non-leaf vertex is the median vertex of three leaves). In this paper we describe a number of new results concerning triplet covers of minimum size. In particular, we characterize such covers in terms of an associated graph being a 2-tree. Also, we show that minimum triplet covers are 'shellable' and thereby provide a set of pairs for which the inter-leaf distance values will uniquely determine the underlying tree and its associated branch lengths.
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页码:1827 / 1840
页数:14
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