OpenSegSPIM: a user-friendly segmentation tool for SPIM data

被引：10
|
作者：
Gole, Laurent [1 ]
Ong, Kok Haur [2 ]
Boudier, Thomas [3 ]
Yu, Weimiao [2 ]
Ahmed, Sohail [1 ]
机构：
[1] ASTAR, Inst Med Biol, Singapore 13867, Singapore
[2] ASTAR, Inst Mol & Cell Biol, Singapore 13867, Singapore
[3] ASTAR, BioInformat Inst BII, IPAL, UMI 2955,CNRS,UPMC,UJF,IMT,I2R,NUS, Singapore 13867, Singapore
来源：
BIOINFORMATICS | 2016年 / 32卷 / 13期
关键词：
PLANE ILLUMINATION MICROSCOPY; LIGHT-SHEET MICROSCOPY; SOFTWARE; PLATFORM;
D O I：
10.1093/bioinformatics/btw093
中图分类号：
Q5 [生物化学];
学科分类号：
071010 ; 081704 ;
摘要：
A Summary: OpenSegSPIM is an open access and user friendly 3D automatic quantitative analysis tool for Single Plane Illumination Microscopy data. The software is designed to extract, in a user-friendly way, quantitative relevant information from SPIM image stacks, such as the number of nuclei or cells. It provides quantitative measurement (volume, sphericity, distance, intensity) on Light Sheet Fluorescent Microscopy images.
引用
收藏
页码：2075 / 2077
页数：3
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