Tumor necrosis factor (TNF)-α-308G/A (rs1800629) polymorphism distribution in North India and its association with pemphigus: Case-control study and meta-analysis

Pemphigus is an autoimmune blistering disorder of skin and/or mucosal surfaces characterized by intraepithelial lesions and immunoglobulin-G autoantibodies against desmogleins (proteins critical in cell-to-cell adhesion). Genetic, immunological, hormonal, and environmental factors are known to contribute to its etiology. Tumor necrosis factor-alpha (TNF-alpha) which plays a key role in pathogenesis of many infectious and inflammatory diseases has been found in high levels in lesional skin and sera of pemphigus patients. However, studies on association of single nucleotide polymorphism (SNP) in promoter region of TNF-alpha at position -308 affecting G to A transition with pemphigus has been scarce. This study was conducted to evaluate the TNF-alpha -308G/A SNP distribution in North Indian cohort, and to define the association between the TNF-alpha -308G/A SNP distribution and pemphigus, globally, by means of meta-analysis. TNF-alpha -308G/A SNP in pemphigus patients was investigated by cytokine genotyping using genomic DNA by PCR with sequence-specific primers. Meta-analysis of the data, including four previously published studies from other populations, was performed to generate a meaningful relationship. The results of our case-control study indicate non-significant differences between patients and controls in TNF-alpha -308G/A SNP. The meta-analysis also revealed that TNF-alpha -308G/A SNP is not associated with pemphigus risk in population at large; however, it may be contributing towards autoimmune phenomenon in pemphigus by being a part of its multifactorial etiology. This study provides evidence that the TNF-alpha -308G/A polymorphism is not associated with overall pemphigus susceptibility. Nevertheless, further studies on specific ethnicity and pemphigus variants are necessary to validate the findings.