Protein structure determination from 13C spin-diffusion solid-state NMR spectroscopy

被引:135
|
作者
Manolikas, Theofanis [1 ]
Herrmann, Torsten [1 ]
Meier, Beat H. [1 ]
机构
[1] ETH, Inst Mol Biol & Biophys, CH-8093 Zurich, Switzerland
关键词
D O I
10.1021/ja078039s
中图分类号
O6 [化学];
学科分类号
0703 ;
摘要
Proton-driven C-13 spin diffusion (PDSD) is a simple and robust two-dimensional NMR experiment. It leads to spectra with a high signal-to-noise ratio in which cross-peaks contain information about internuclear distances. We show that the total information content is sufficient to determine the atomic-resolution structure of a small protein from a single, uniformly C-13-, N-15-labeled microcrystalline sample. For the example of ubiquitin, the structure was determined by a manual procedure followed by an automatic optimization of the manual structure as well as by a fully automated structure determination approach. The relationship between internuclear distances and cross-peak intensities in the spectra is investigated.
引用
收藏
页码:3959 / 3966
页数:8
相关论文
共 50 条
  • [31] DETERMINATION OF THE PRIMARY STRUCTURE OF POLYSACCHARIDES AND THEIR DERIVATIVES BY SOLID-STATE C-13 NMR-SPECTROSCOPY
    HALL, LD
    YALPANI, M
    [J]. CARBOHYDRATE RESEARCH, 1981, 91 (02) : C1 - C4
  • [32] Solid-State Selective 13C Excitation and Spin Diffusion NMR To Resolve Spatial Dimensions in Plant Cell Walls
    Foston, Marcus
    Katahira, Rui
    Gjersing, Erica
    Davis, Mark F.
    Ragauskas, Arthur J.
    [J]. JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY, 2012, 60 (06) : 1419 - 1427
  • [33] A 13C solid-state NMR analysis of steroid compounds
    Yang, Jen-Hsien
    Ho, Yu
    Tzou, Der-Lii M.
    [J]. MAGNETIC RESONANCE IN CHEMISTRY, 2008, 46 (08) : 718 - 725
  • [34] 13C solid-state NMR study of polyelectrolyte multilayers
    Smith, RN
    Reven, L
    Barrett, CJ
    [J]. MACROMOLECULES, 2003, 36 (06) : 1876 - 1881
  • [35] Solid-state 13C NMR study of indomethacin polymorphism
    Masuda, Katsuhiko
    Tabata, Sachio
    Kono, Hiroyuki
    Sakata, Yasuyuki
    Hayase, Tetsuo
    Yonemochi, Etsuo
    Terada, Katsuhide
    [J]. INTERNATIONAL JOURNAL OF PHARMACEUTICS, 2006, 318 (1-2) : 146 - 153
  • [36] RNA structure determination by solid-state NMR spectroscopy
    Alexander Marchanka
    Bernd Simon
    Gerhard Althoff-Ospelt
    Teresa Carlomagno
    [J]. Nature Communications, 6
  • [37] 13C solid-state NMR of gramicidin A in a lipid membrane
    Quist, PO
    [J]. BIOPHYSICAL JOURNAL, 1998, 75 (05) : 2478 - 2488
  • [38] RNA structure determination by solid-state NMR spectroscopy
    Marchanka, Alexander
    Simon, Bernd
    Althoff-Ospelt, Gerhard
    Carlomagno, Teresa
    [J]. NATURE COMMUNICATIONS, 2015, 6
  • [39] Spin-state-selective methods in solution- and solid-state biomolecular 13C NMR
    Felli, Isabella C.
    Pierattelli, Roberta
    [J]. PROGRESS IN NUCLEAR MAGNETIC RESONANCE SPECTROSCOPY, 2015, 84 : 1 - 13
  • [40] Probing Molecular Motion by Double-Quantum (13C,13C) Solid-State NMR Spectroscopy: Application to Ubiquitin
    Schneider, Robert
    Seidel, Karsten
    Etzkorn, Manuel
    Lange, Adam
    Becker, Stefan
    Baldus, Marc
    [J]. JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 2010, 132 (01) : 223 - 233