Whole Genome Sequencing and Assembly of the Asian Honey Bee Apis dorsata

被引:20
|
作者
Oppenheim, Sara [1 ]
Cao, Xiaolong [2 ]
Rueppel, Olav [3 ]
Krongdang, Sasiprapa [4 ,5 ]
Phokasem, Patcharin [4 ,5 ]
DeSalle, Rob [1 ]
Goodwin, Sara [6 ]
Xing, Jinchuan [2 ]
Chantawannakul, Panuwan [4 ,5 ]
Rosenfeld, Jeffrey A. [1 ,7 ,8 ]
机构
[1] Amer Museum Nat Hist, Sackler Inst Comparat Gen, New York, NY 10024 USA
[2] Rutgers State Univ, Human Genet Inst New Jersey, Dept Genet, New Brunswick, NJ USA
[3] Univ N Carolina, Biol Dept, Greensboro, NC USA
[4] Chiang Mai Univ, Fac Sci, Dept Biol, Chiang Mai, Thailand
[5] Chiang Mai Univ, Fac Sci, ESRC, Chiang Mai, Thailand
[6] Cold Spring Harbor Lab, POB 100, Cold Spring Harbor, NY 11724 USA
[7] Rutgers Canc Inst New Jersey, New Brunswick, NJ 08901 USA
[8] Univ Med & Dent New Jersey, Dept Pathol, New Brunswick, NJ 08901 USA
来源
GENOME BIOLOGY AND EVOLUTION | 2020年 / 12卷 / 01期
关键词
bees; honey; Apis; BACTERIAL COMMUNITIES; DATABASE; IDENTIFICATION; ANNOTATION; EVOLUTION; MELLIFERA;
D O I
10.1093/gbe/evz277
中图分类号
Q [生物科学];
学科分类号
07 ; 0710 ; 09 ;
摘要
The Asian honey bee (Apis dorsata) is distinct from its more widely distributed cousin Apis mellifera by a few key characteristics. Most prominently, A. dorsata, nest in the open by forming a colony clustered around the honeycomb, whereas A. mellifera nest in concealed cavities. Additionally, the worker and reproductive castes are all of the same size in A. dorsata. In order to investigate these differences, we performed whole genome sequencing of A. dorsata using a hybrid Oxford Nanopore and Illumina approach. The 223 Mb genome has an N50 of 35 kb with the largest scaffold of 302 kb. We have found that there are many genes in the dorsata genome that are distinct from other hymenoptera and also large amounts of transposable elements, and we suggest some candidate genes for A. dorsata's exceptional level of defensive aggression.
引用
收藏
页码:3677 / 3683
页数:7
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