A High-performance Parallel Algorithm for Gene Sequence Discovery

被引:0
|
作者
Liu, Jun [1 ]
Ji, Zhen-Zhou [1 ]
Ning, Yu [1 ]
机构
[1] Harbin Inst Technol, Dept Comp Sci & Technol, Weihai 264209, Peoples R China
关键词
Bioinformatics; Gene sequence; Intermediate character string; Parallelization;
D O I
暂无
中图分类号
TP18 [人工智能理论];
学科分类号
081104 ; 0812 ; 0835 ; 1405 ;
摘要
This paper first and foremost illustrates the problem of gene sequence discovery and introduces the way to show gene sequence discovery mode, the scoring mode, the evaluation index as well as other contents about the method of calculation in gene sequence discovery. Meanwhile, this paper detailedly analyzes the primary thought and feature about the discovery, and then a further study is made to confirm the feasibility of parallelization. This paper takes branch bounding method and parallel algorithm to improve its running speed and algorithm performance. By analyzing experimental data, a conclusion is drawn that the parallel algorithm of gene sequence discovery could considerably improve its performance and guarantee its validity.
引用
收藏
页码:425 / 430
页数:6
相关论文
共 50 条
  • [31] Detecting anomalies in high-performance parallel programs
    Florez, G
    Liu, Z
    Bridges, S
    Vaughn, R
    Skjellum, A
    ITCC 2004: INTERNATIONAL CONFERENCE ON INFORMATION TECHNOLOGY: CODING AND COMPUTING, VOL 2, PROCEEDINGS, 2004, : 30 - 34
  • [32] High-Performance Parallel Radix Sort on FPGA
    Romanous, Bashar
    Rezvani, Mohammadreza
    Huang, Junjie
    Wong, Daniel
    Papalexakis, Evangelos E.
    Tsotras, Vassilis J.
    Najjar, Walid
    28TH IEEE INTERNATIONAL SYMPOSIUM ON FIELD-PROGRAMMABLE CUSTOM COMPUTING MACHINES (FCCM), 2020, : 224 - 224
  • [33] A high-performance video segmentation algorithm
    Mao, B
    Chu, NJ
    Zhang, FY
    PROCEEDINGS OF THE INTERNATIONAL CONFERENCE ON IMAGING SCIENCE, SYSTEMS AND TECHNOLOGY, VOLS I AND II, 2001, : 410 - 413
  • [34] Parallel iterative matching-based cell scheduling algorithm for high-performance ATM switches
    Park, YK
    Lee, YK
    IEEE TRANSACTIONS ON CONSUMER ELECTRONICS, 2001, 47 (01) : 134 - 137
  • [35] High-performance medical data processing technology based on distributed parallel machine learning algorithm
    Ji Liu
    Xiao Liang
    Wenxi Ruan
    Bo Zhang
    The Journal of Supercomputing, 2022, 78 : 5933 - 5956
  • [36] ` Parallel Algorithm of SOI Layout Decomposition for Double Patterning Lithography on High-Performance Computer Platforms
    Verstov, Vladimir
    Shakhnov, Vadim
    Zinchenko, Lyudmila
    TECHNOLOGICAL INNOVATION FOR COLLECTIVE AWARENESS SYSTEMS, 2014, 423 : 543 - 550
  • [37] High-Performance Mobility Simulation: Implementation of a Parallel Distributed Message-Passing Algorithm for MATSim
    Laudan, Janek
    Heinrich, Paul
    Nagel, Kai
    INFORMATION, 2025, 16 (02)
  • [38] High-performance medical data processing technology based on distributed parallel machine learning algorithm
    Liu, Ji
    Liang, Xiao
    Ruan, Wenxi
    Zhang, Bo
    JOURNAL OF SUPERCOMPUTING, 2022, 78 (04): : 5933 - 5956
  • [39] HipMCL: a high-performance parallel implementation of the Markov clustering algorithm for large-scale networks
    Azad, Ariful
    Pavlopoulos, Georgios A.
    Ouzounis, Christos A.
    Kyrpides, Nikos C.
    Buluc, Aydin
    NUCLEIC ACIDS RESEARCH, 2018, 46 (06) : E33
  • [40] Performance modeling and evaluation of high-performance parallel and distributed systems
    Ould-Khaoua, M
    Sarbazi-Azad, H
    Obaidat, MS
    PERFORMANCE EVALUATION, 2005, 60 (1-4) : 1 - 4