Next-generation sequencing analysis of Pardosa pseudoannulata's diet composition in different habitats

被引:13
|
作者
Zhong, Wentao [1 ,2 ]
Tan, Zhaojun [1 ,3 ]
Wang, Bo [1 ,4 ]
Yan, Hengmei [1 ,4 ]
机构
[1] Hunan Normal Univ, Coll Life Sci, Changsha 410081, Hunan, Peoples R China
[2] Testing Inst Prod & Commod Supervis, Changsha 410007, Hunan, Peoples R China
[3] Dongkou 1 Middle Sch, Dongkou 422300, Hunan, Peoples R China
[4] Beijing Normal Univ, Coll Engn & Technol, Zhuhai Campus, Zhuhai 519087, Guangdong, Peoples R China
基金
中国国家自然科学基金;
关键词
Next-generation sequencing; Diet analysis; Pardosa pseudoannulata; Prey taxa; DNA; SPIDER; BIODIVERSITY; PREDATION; ARANEAE; SIZE;
D O I
10.1016/j.sjbs.2018.08.004
中图分类号
Q [生物科学];
学科分类号
07 ; 0710 ; 09 ;
摘要
Spiders are the most common and predominant predators in terrestrial ecosystems. The predatory behavior of spiders affects the energy flow across the food web within an ecosystem. Traditiaonal methods for analyzing spider diets such as field observation, anatomy and faeces analysis are not suitable for spider experiments due to spiders' special dietary behavior. The molecular method based on the specific primers of prey DNA seems to be inefficient either in spite of its wide application in diet analysis. As the next-generation sequencing (NGS) technology becomes prevalent in many different areas, several cases of the NGS-based analysis of mammal diets have been published. This study analyzed the diet differences of Pardosa pseudoannulata (Araneae: Lycosidae) in four habitats (a wetland, a tea plantation, an alpine meadow and a paddy field) by using the NGS technology, combined with the DNA barcode method. The results suggested that the Pardosa pseudoannulata feed on a broad range of prey, and 7 orders and 24 families of insects were detected in the four investigated habitats. Moreover, it is found that the diet diversity of Pardosa pseudoannulata is greatly influenced by their living environments and seasons. In a nutshell, this study established an NGS-based methodology for spider diets analysis, and the results provided some basic materials to inform the protection and utilization of the Pardosa pseudoannulata as a potential eco-friendly predator against pests. (C) 2018 Production and hosting by Elsevier B.V. on behalf of King Saud University.
引用
收藏
页码:165 / 172
页数:8
相关论文
共 50 条
  • [21] Focus on next-generation sequencing data analysis
    Rusk N.
    Nature Methods, 2009, 6 (Suppl 11) : S1 - S1
  • [22] Linkage Analysis in the Next-Generation Sequencing Era
    Bailey-Wilson, Joan E.
    Wilson, Alexander F.
    HUMAN HEREDITY, 2011, 72 (04) : 228 - 236
  • [23] Applications and data analysis of next-generation sequencing
    Vogl, Ina
    Benet-Pages, Anna
    Eck, Sebastian H.
    Kuhn, Marius
    Vosberg, Sebastian
    Greif, Philipp A.
    Metzeler, Klaus H.
    Biskup, Saskia
    Mueller-Reible, Clemens
    Klein, Hanns-Georg
    LABORATORIUMSMEDIZIN-JOURNAL OF LABORATORY MEDICINE, 2013, 37 (06): : 305 - 315
  • [24] Transcriptome analysis using next-generation sequencing
    Mutz, Kai-Oliver
    Heilkenbrinker, Alexandra
    Loenne, Maren
    Walter, Johanna-Gabriela
    Stahl, Frank
    CURRENT OPINION IN BIOTECHNOLOGY, 2013, 24 (01) : 22 - 30
  • [25] Pathway analysis with next-generation sequencing data
    Zhao, Jinying
    Zhu, Yun
    Boerwinkle, Eric
    Xiong, Momiao
    EUROPEAN JOURNAL OF HUMAN GENETICS, 2015, 23 (04) : 507 - 515
  • [26] Mosaicism: challenges for next-generation sequencing analysis
    Sanchez, Louisa
    Douglas, Evelyn
    Lawrence, David
    Soubrier, Julien
    Gao, Song
    McGregor, Lesley
    Barnett, Christopher
    Kassahn, Karin
    Yu, Sui
    Friend, Kathryn
    EUROPEAN JOURNAL OF HUMAN GENETICS, 2022, 30 (SUPPL 1) : 474 - 474
  • [27] NGSNGS: next-generation simulator for next-generation sequencing data
    Henriksen, Rasmus Amund
    Zhao, Lei
    Korneliussen, Thorfinn Sand
    BIOINFORMATICS, 2023, 39 (01)
  • [28] Focus on next-generation sequencing data analysis A user's guide
    Rusk, Nicole
    NATURE METHODS, 2009, 6 (11) : S1 - S1
  • [29] Diet composition of wild columbiform birds: next-generation sequencing of plant and metazoan DNA in faecal samples
    Schumm, Yvonne R. R.
    Masello, Juan F. F.
    Vreugdenhil-Rowlands, Jennifer
    Fischer, Dominik
    Hillerich, Klaus
    Quillfeldt, Petra
    SCIENCE OF NATURE, 2023, 110 (04):
  • [30] Integrative Analysis of Next-Generation Sequencing for Next-Generation Cancer Research toward Artificial Intelligence
    Park, Youngjun
    Heider, Dominik
    Hauschild, Anne-Christin
    CANCERS, 2021, 13 (13)