Complete Chloroplast Genome Sequence and Phylogenetic Analysis of Aster tataricus

被引:37
|
作者
Shen, Xiaofeng [1 ]
Guo, Shuai [2 ]
Yin, Yu [3 ]
Zhang, Jingjing [4 ]
Yin, Xianmei [5 ]
Liang, Conglian [6 ]
Wang, Zhangwei [7 ]
Huang, Bingfeng [7 ]
Liu, Yanhong [7 ]
Xiao, Shuiming [1 ,8 ]
Zhu, Guangwei [1 ,8 ]
机构
[1] China Acad Chinese Med Sci, Artemisinin Res Ctr, Inst Chinese Mat Med, Beijing 100700, Peoples R China
[2] Henan Univ Sci & Technol, Coll Agr, Coll Tree Peony, Luoyang 471023, Peoples R China
[3] Shandong Univ, Sch Comp Sci & Technol, Jinan 250101, Shandong, Peoples R China
[4] Hubei Univ Chinese Med, Coll Pharm, Wuhan 430065, Hubei, Peoples R China
[5] Chengdu Univ Chinese Med, Coll Pharm, Chengdu 611137, Sichuan, Peoples R China
[6] Shandong Univ Tradit Chinese Med, Coll Pharm, Jinan 250355, Shandong, Peoples R China
[7] State Key Lab Innovat Nat Med & TCM Inject, Ganzhou 341000, Peoples R China
[8] Jiangxi Qingfeng Pharmaceut Co LTD, State Key Lab Innovat Nat Med & TCM Inject, Ganzhou 341000, Peoples R China
来源
MOLECULES | 2018年 / 23卷 / 10期
关键词
Aster tataricus; chloroplast genome; phylogeny; ANCIENT EVOLUTIONARY SPLIT; GENETIC DIVERSITY; DNA; PENTAPEPTIDES; INVERSIONS; EXPRESSION; ORGANELLAR; INTRON; ORIGIN;
D O I
10.3390/molecules23102426
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
We sequenced and analyzed the complete chloroplast genome of Aster tataricus (family Asteraceae), a Chinese herb used medicinally to relieve coughs and reduce sputum. The A. tataricus chloroplast genome was 152,992 bp in size, and harbored a pair of inverted repeat regions (IRa and IRb, each 24,850 bp) divided into a large single-copy (LSC, 84,698 bp) and a small single-copy (SSC, 18,250 bp) region. Our annotation revealed that the A. tataricus chloroplast genome contained 115 genes, including 81 protein-coding genes, 4 ribosomal RNA genes, and 30 transfer RNA genes. In addition, 70 simple sequence repeats (SSRs) were detected in the A. tataricus chloroplast genome, including mononucleotides (36), dinucleotides (1), trinucleotides (23), tetranucleotides (1), pentanucleotides (8), and hexanucleotides (1). Comparative chloroplast genome analysis of three Aster species indicated that a higher similarity was preserved in the IR regions than in the LSC and SSC regions, and that the differences in the degree of preservation were slighter between A. tataricus and A. altaicus than between A. tataricus and A. spathulifolius. Phylogenetic analysis revealed that A. tataricus was more closely related to A. altaicus than to A. spathulifolius. Our findings offer valuable information for future research on Aster species identification and selective breeding.
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页数:14
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