Evaluating the Alzheimer's disease data landscape

被引:26
|
作者
Birkenbihl, Colin [1 ,2 ]
Salimi, Yasamin [1 ,2 ]
Domingo-Fernandez, Daniel [1 ,2 ]
Lovestone, Simon [3 ]
Froehlich, Holger [1 ,2 ]
Hofmann-Apitius, Martin [1 ,2 ]
机构
[1] Fraunhofer Inst Algorithms & Sci Comp SCAI, Dept Bioinformat, St Augustin, Germany
[2] Rheinische Friedrich Wilhelms Univ Bonn, Bioinformat Grp, Bonn, Germany
[3] Univ Oxford, Dept Psychiat, Oxford, England
关键词
Alzheimer's disease; biomarker; clinical study; cohort; cohort study; data; data access; data sharing; data viewer; data-driven; data set; dementia; disease modeling; FAIR data; magnetic resonance imaging; open-science; patient level data;
D O I
10.1002/trc2.12102
中图分类号
R74 [神经病学与精神病学];
学科分类号
摘要
Introduction: Numerous studies have collected Alzheimer's disease (AD) cohort data sets. To achieve reproducible, robust results in data-driven approaches, an evaluation of the present data landscape is vital. Methods: Previous efforts relied exclusively on metadata and literature. Here, we evaluate the data landscape by directly investigating nine patient-level data sets generated in major clinical cohort studies. Results: The investigated cohorts differ in key characteristics, such as demographics and distributions of AD biomarkers. Analyzing the ethnoracial diversity revealed a strong bias toward White/Caucasian individuals. We described and compared the measured data modalities. Finally, the available longitudinal data for important AD biomarkers was evaluated. All results are explorable through our web application ADataViewer (htts'lladata.scal.fratinhofer.de). Discussion: Our evaluation exposed critical limitations in the AD data landscape that impede comparative approaches across multiple data sets. Comparison of our results to those gained by metadata-based approaches highlights that thorough investigation of real patient-level data is imperative to assess a data landscape.
引用
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页数:11
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