Completely genomic and evolutionary characteristics of human-dominant G9P[8] group A rotavirus strains in Yunnan, China

被引：13
|
作者：
Dian, Ziqin [1 ,2 ]
Wang, Binghui [1 ]
Fan, Mao [3 ]
Dong, Shuwei [1 ]
Feng, Yue [1 ]
Zhang, A-Mei [1 ]
Liu, Li [1 ]
Niu, Hua [2 ]
Lit, Yuanyue [1 ]
Xia, Xueshan [1 ]
机构：
[1] Kunming Univ Sci & Technol, Fac Life Sci & Technol, Kunming 650500, Yunnan, Peoples R China
[2] First Peoples Hosp Yunnan Prov, Dept Clin Lab, Kunming 650032, Yunnan, Peoples R China
[3] Kunming Childrens Hosp, Dept Clin Lab, Kunming 650034, Yunnan, Peoples R China
来源：
JOURNAL OF GENERAL VIROLOGY | 2017年 / 98卷 / 06期
基金：
中国国家自然科学基金;
关键词：
rotavirus; acute gastroenteritis; genome constellation; evolution; G9; STRAINS; JAPAN; GASTROENTERITIS; VACCINES; VP7;
D O I：
10.1099/jgv.0.000807
中图分类号：
Q81 [生物工程学（生物技术）]; Q93 [微生物学];
学科分类号：
071005 ; 0836 ; 090102 ; 100705 ;
摘要：
G9P[8] rotavirus A (RVA) has been identified as the predominant genotype circulating in Yunnan, China. To elucidate the molecular characteristics of its genetic composition at the whole-genome level, the genomes of 12 strains isolated from paediatric patients with diarrhoea were fully sequenced and characterized. Eleven of the 12 strains were genotyped as G9-P [8]-11-R1-C1-M1-Al-N1-T1-E1-H1, which is closely related to the Wa-like genotype 1 constellation. In contrast, one strain was genotyped as G9-P[8]-I1-R1-Cl-M1-Al-N2-T1-El-H1, with the NSP2 gene characterized as a DS-1 like genotype. Bayesian phylogenetic analysis indicated that G9 strains had emerged in 1932 with an estimated average evolutionary rate of 1.63x10(-3) substitutions/site/year. Considering the high prevalence and fast evolutionary rate of G9P[8] rotaviruses, our results suggest that G9P[8] RVA should be strictly monitored in China.
引用
收藏
页码：1163 / 1168
页数：6
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