Charge-charge and cation-π interactions in ligand binding to G protein-coupled receptors
被引:8
|
作者:
Dolker, N.
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机构:
Univ Autonoma Barcelona, Fac Med, Lab Med Computac, Unitat Bioestadist, E-08193 Barcelona, SpainUniv Autonoma Barcelona, Fac Med, Lab Med Computac, Unitat Bioestadist, E-08193 Barcelona, Spain
Dolker, N.
[1
]
Deupi, X.
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Univ Autonoma Barcelona, Fac Med, Lab Med Computac, Unitat Bioestadist, E-08193 Barcelona, SpainUniv Autonoma Barcelona, Fac Med, Lab Med Computac, Unitat Bioestadist, E-08193 Barcelona, Spain
Deupi, X.
[1
]
Pardo, L.
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Univ Autonoma Barcelona, Fac Med, Lab Med Computac, Unitat Bioestadist, E-08193 Barcelona, SpainUniv Autonoma Barcelona, Fac Med, Lab Med Computac, Unitat Bioestadist, E-08193 Barcelona, Spain
Pardo, L.
[1
]
Campillo, M.
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Univ Autonoma Barcelona, Fac Med, Lab Med Computac, Unitat Bioestadist, E-08193 Barcelona, SpainUniv Autonoma Barcelona, Fac Med, Lab Med Computac, Unitat Bioestadist, E-08193 Barcelona, Spain
Campillo, M.
[1
]
机构:
[1] Univ Autonoma Barcelona, Fac Med, Lab Med Computac, Unitat Bioestadist, E-08193 Barcelona, Spain
cation-pi interactions;
G protein-coupled receptors;
ligand binding;
D O I:
10.1007/s00214-007-0341-3
中图分类号:
O64 [物理化学(理论化学)、化学物理学];
学科分类号:
070304 ;
081704 ;
摘要:
To study the importance of charge-charge and cation-pi interactions for the binding of positively charged amine ligands to their receptors, the energies of interaction between [(CH3)(4)-N](+), [(CH3)(3)-NH](+), and [(CH3)(4)-NH3](+) and acetate, as a model of Asp and Glu, and with benzene, as a model of aromatic side chains, were obtained at the MP2/aug-cc-pVDZ level of theory. The free energies of solvation in water were also calculated for the different amines. It was found that, although primary amines form stronger charge-charge interactions with acetate than tertiary or quaternary amines, the difference is not large enough to compensate their higher solvation energy. Quaternary amines show the weakest interaction with acetate. However, their alkyl groups can interact with various aromatic groups, enhancing ligand binding to the receptor. The analysis was completed with MD calculations on amine binding to the G protein-coupled receptors beta(2)AR and CCR5. The calculations on the model systems were found to be in good agreement with the simulations of the ligand-receptor complexes.
机构:
Univ Fed Rio de Janeiro, Inst Biofis Carlos Chagas Filho, Dept Biofis, Lab Modelagem & Dinam Mol, Ave Carlos Chagas Filho 373,Bl G,Sl G1-019, BR-21941902 Rio De Janeiro, RJ, BrazilUniv Fed Rio de Janeiro, Inst Biofis Carlos Chagas Filho, Dept Biofis, Lab Modelagem & Dinam Mol, Ave Carlos Chagas Filho 373,Bl G,Sl G1-019, BR-21941902 Rio De Janeiro, RJ, Brazil
Hoelz, Lucas V. B.
de Freitas, Guilherme B. L.
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Univ Estadual Centro Oeste, Dept Farm, Setor Ciencias Saude, BR-85040080 Guarapuava, PR, BrazilUniv Fed Rio de Janeiro, Inst Biofis Carlos Chagas Filho, Dept Biofis, Lab Modelagem & Dinam Mol, Ave Carlos Chagas Filho 373,Bl G,Sl G1-019, BR-21941902 Rio De Janeiro, RJ, Brazil
de Freitas, Guilherme B. L.
Torres, Pedro Henrique M.
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Univ Fed Rio de Janeiro, Inst Biofis Carlos Chagas Filho, Dept Biofis, Lab Modelagem & Dinam Mol, Ave Carlos Chagas Filho 373,Bl G,Sl G1-019, BR-21941902 Rio De Janeiro, RJ, BrazilUniv Fed Rio de Janeiro, Inst Biofis Carlos Chagas Filho, Dept Biofis, Lab Modelagem & Dinam Mol, Ave Carlos Chagas Filho 373,Bl G,Sl G1-019, BR-21941902 Rio De Janeiro, RJ, Brazil
Torres, Pedro Henrique M.
Fernandes, Tacio Vinicio A.
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Univ Fed Rio de Janeiro, Inst Biofis Carlos Chagas Filho, Dept Biofis, Lab Modelagem & Dinam Mol, Ave Carlos Chagas Filho 373,Bl G,Sl G1-019, BR-21941902 Rio De Janeiro, RJ, BrazilUniv Fed Rio de Janeiro, Inst Biofis Carlos Chagas Filho, Dept Biofis, Lab Modelagem & Dinam Mol, Ave Carlos Chagas Filho 373,Bl G,Sl G1-019, BR-21941902 Rio De Janeiro, RJ, Brazil
Fernandes, Tacio Vinicio A.
Albuquerque, Magaly G.
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Univ Fed Rio de Janeiro, Inst Quim, Dept Quim Organ, Lab Modelagem Mol, BR-21941909 Rio De Janeiro, RJ, BrazilUniv Fed Rio de Janeiro, Inst Biofis Carlos Chagas Filho, Dept Biofis, Lab Modelagem & Dinam Mol, Ave Carlos Chagas Filho 373,Bl G,Sl G1-019, BR-21941902 Rio De Janeiro, RJ, Brazil
Albuquerque, Magaly G.
da Silva, Joaquim Fernando M.
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机构:
Univ Fed Rio de Janeiro, Inst Quim, Dept Quim Organ, Polo Xistoquim, BR-21941909 Rio De Janeiro, RJ, BrazilUniv Fed Rio de Janeiro, Inst Biofis Carlos Chagas Filho, Dept Biofis, Lab Modelagem & Dinam Mol, Ave Carlos Chagas Filho 373,Bl G,Sl G1-019, BR-21941902 Rio De Janeiro, RJ, Brazil
da Silva, Joaquim Fernando M.
Pascutti, Pedro G.
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Univ Fed Rio de Janeiro, Inst Biofis Carlos Chagas Filho, Dept Biofis, Lab Modelagem & Dinam Mol, Ave Carlos Chagas Filho 373,Bl G,Sl G1-019, BR-21941902 Rio De Janeiro, RJ, BrazilUniv Fed Rio de Janeiro, Inst Biofis Carlos Chagas Filho, Dept Biofis, Lab Modelagem & Dinam Mol, Ave Carlos Chagas Filho 373,Bl G,Sl G1-019, BR-21941902 Rio De Janeiro, RJ, Brazil
Pascutti, Pedro G.
de Alencastro, Ricardo B.
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Univ Fed Rio de Janeiro, Inst Quim, Dept Quim Organ, Lab Modelagem Mol, BR-21941909 Rio De Janeiro, RJ, BrazilUniv Fed Rio de Janeiro, Inst Biofis Carlos Chagas Filho, Dept Biofis, Lab Modelagem & Dinam Mol, Ave Carlos Chagas Filho 373,Bl G,Sl G1-019, BR-21941902 Rio De Janeiro, RJ, Brazil
机构:
Natl Res Univ, Moscow Inst Phys & Technol, Res Ctr Mol Mech Aging & Age Related Dis, Dolgoprudnyi, RussiaNatl Res Univ, Moscow Inst Phys & Technol, Res Ctr Mol Mech Aging & Age Related Dis, Dolgoprudnyi, Russia
Shaulskaia, Viktoriia
Luginina, Aleksandra
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Natl Res Univ, Moscow Inst Phys & Technol, Res Ctr Mol Mech Aging & Age Related Dis, Dolgoprudnyi, RussiaNatl Res Univ, Moscow Inst Phys & Technol, Res Ctr Mol Mech Aging & Age Related Dis, Dolgoprudnyi, Russia
Luginina, Aleksandra
Khorn, Polina
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Natl Res Univ, Moscow Inst Phys & Technol, Res Ctr Mol Mech Aging & Age Related Dis, Dolgoprudnyi, RussiaNatl Res Univ, Moscow Inst Phys & Technol, Res Ctr Mol Mech Aging & Age Related Dis, Dolgoprudnyi, Russia
Khorn, Polina
Gusach, Anastasiia
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Natl Res Univ, Moscow Inst Phys & Technol, Res Ctr Mol Mech Aging & Age Related Dis, Dolgoprudnyi, RussiaNatl Res Univ, Moscow Inst Phys & Technol, Res Ctr Mol Mech Aging & Age Related Dis, Dolgoprudnyi, Russia
Gusach, Anastasiia
Sukhacheva, Olga
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Natl Res Univ, Moscow Inst Phys & Technol, Res Ctr Mol Mech Aging & Age Related Dis, Dolgoprudnyi, RussiaNatl Res Univ, Moscow Inst Phys & Technol, Res Ctr Mol Mech Aging & Age Related Dis, Dolgoprudnyi, Russia
Sukhacheva, Olga
Smirnova, Ekaterina
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Natl Res Univ, Moscow Inst Phys & Technol, Res Ctr Mol Mech Aging & Age Related Dis, Dolgoprudnyi, RussiaNatl Res Univ, Moscow Inst Phys & Technol, Res Ctr Mol Mech Aging & Age Related Dis, Dolgoprudnyi, Russia
Smirnova, Ekaterina
Borshchevskiy, Valentin
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Natl Res Univ, Moscow Inst Phys & Technol, Res Ctr Mol Mech Aging & Age Related Dis, Dolgoprudnyi, RussiaNatl Res Univ, Moscow Inst Phys & Technol, Res Ctr Mol Mech Aging & Age Related Dis, Dolgoprudnyi, Russia
Borshchevskiy, Valentin
Mishin, Alexey
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Natl Res Univ, Moscow Inst Phys & Technol, Res Ctr Mol Mech Aging & Age Related Dis, Dolgoprudnyi, RussiaNatl Res Univ, Moscow Inst Phys & Technol, Res Ctr Mol Mech Aging & Age Related Dis, Dolgoprudnyi, Russia
Mishin, Alexey
Cherezov, Vadim
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机构:
Natl Res Univ, Moscow Inst Phys & Technol, Res Ctr Mol Mech Aging & Age Related Dis, Dolgoprudnyi, Russia
Univ Southern Calif, Bridge Inst, Dept Chem, Los Angeles, CA 90007 USA
Univ Southern Calif, Bridge Inst, Dept Biol Sci, Los Angeles, CA 90007 USANatl Res Univ, Moscow Inst Phys & Technol, Res Ctr Mol Mech Aging & Age Related Dis, Dolgoprudnyi, Russia
机构:
Moscow Inst Phys & Technol, Res Ctr Mol Mech Aging & Age Related Dis, Dolgoprudnyi 141701, Moscow Region, RussiaMoscow Inst Phys & Technol, Res Ctr Mol Mech Aging & Age Related Dis, Dolgoprudnyi 141701, Moscow Region, Russia
Luginina, A.
Gusach, A.
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机构:
Moscow Inst Phys & Technol, Res Ctr Mol Mech Aging & Age Related Dis, Dolgoprudnyi 141701, Moscow Region, RussiaMoscow Inst Phys & Technol, Res Ctr Mol Mech Aging & Age Related Dis, Dolgoprudnyi 141701, Moscow Region, Russia
Gusach, A.
Marin, E.
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Moscow Inst Phys & Technol, Res Ctr Mol Mech Aging & Age Related Dis, Dolgoprudnyi 141701, Moscow Region, RussiaMoscow Inst Phys & Technol, Res Ctr Mol Mech Aging & Age Related Dis, Dolgoprudnyi 141701, Moscow Region, Russia
Marin, E.
Shaulskaia, V.
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机构:
Moscow Inst Phys & Technol, Res Ctr Mol Mech Aging & Age Related Dis, Dolgoprudnyi 141701, Moscow Region, RussiaMoscow Inst Phys & Technol, Res Ctr Mol Mech Aging & Age Related Dis, Dolgoprudnyi 141701, Moscow Region, Russia
Shaulskaia, V.
Khorn, P.
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Moscow Inst Phys & Technol, Res Ctr Mol Mech Aging & Age Related Dis, Dolgoprudnyi 141701, Moscow Region, RussiaMoscow Inst Phys & Technol, Res Ctr Mol Mech Aging & Age Related Dis, Dolgoprudnyi 141701, Moscow Region, Russia
Khorn, P.
Sukhacheva, O.
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Moscow Inst Phys & Technol, Res Ctr Mol Mech Aging & Age Related Dis, Dolgoprudnyi 141701, Moscow Region, RussiaMoscow Inst Phys & Technol, Res Ctr Mol Mech Aging & Age Related Dis, Dolgoprudnyi 141701, Moscow Region, Russia
Sukhacheva, O.
Borshchevskiy, V.
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机构:
Moscow Inst Phys & Technol, Res Ctr Mol Mech Aging & Age Related Dis, Dolgoprudnyi 141701, Moscow Region, RussiaMoscow Inst Phys & Technol, Res Ctr Mol Mech Aging & Age Related Dis, Dolgoprudnyi 141701, Moscow Region, Russia
Borshchevskiy, V.
Mishin, A.
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机构:
Moscow Inst Phys & Technol, Res Ctr Mol Mech Aging & Age Related Dis, Dolgoprudnyi 141701, Moscow Region, RussiaMoscow Inst Phys & Technol, Res Ctr Mol Mech Aging & Age Related Dis, Dolgoprudnyi 141701, Moscow Region, Russia
Mishin, A.
Cherezov, V.
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h-index: 0
机构:
Moscow Inst Phys & Technol, Res Ctr Mol Mech Aging & Age Related Dis, Dolgoprudnyi 141701, Moscow Region, Russia
Univ Southern Calif, Dept Chem Sci, Bridge Inst, Los Angeles, CA 90007 USA
Univ Southern Calif, Dept Biol Sci, Bridge Inst, Los Angeles, CA 90007 USAMoscow Inst Phys & Technol, Res Ctr Mol Mech Aging & Age Related Dis, Dolgoprudnyi 141701, Moscow Region, Russia