GARBAN:: genomic analysis and rapid biological annotation of cDNA microarray and proteomic data

被引:21
|
作者
Martínez-Cruz, LA
Rubio, A
Martínez-Chantar, ML
Labarga, A
Barrio, I
Podhorski, A
Segura, V
Campo, JLS
Avila, MA
Mato, JM [1 ]
机构
[1] Univ Navarra, Dept Internal Med, Unit Proteom Genom & Bioinformat, Pamplona 31008, Spain
[2] CEIT, San Sebastian, Spain
关键词
D O I
10.1093/bioinformatics/btg291
中图分类号
Q5 [生物化学];
学科分类号
071010 ; 081704 ;
摘要
Genomic Analysis and Rapid Biological ANnotation (GARBAN) is a new tool that provides an integrated framework to analyze simultaneously and compare multiple data sets derived from microarray or proteomic experiments. It carries out automated classifications of genes or proteins according to the criteria of the Gene Ontology Consortium at a level of depth defined by the user. Additionally, it performs clustering analysis of all sets based on functional categories or on differential expression levels. GARBAN also provides graphical representations of the biological pathways in which all the genes/proteins participate.
引用
收藏
页码:2158 / 2160
页数:3
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