The relevance of pedigrees in the conservation genomics era

被引:25
|
作者
Galla, Stephanie J. [1 ,2 ]
Brown, Liz [3 ]
Couch-Lewis, Yvette [4 ]
Cubrinovska, Ilina [2 ]
Eason, Daryl [5 ]
Gooley, Rebecca M. [6 ,7 ]
Hamilton, Jill A. [8 ]
Heath, Julie A. [1 ]
Hauser, Samantha S. [9 ]
Latch, Emily K. [9 ]
Matocq, Marjorie D. [10 ]
Richardson, Anne [11 ]
Wold, Jana R. [2 ]
Hogg, Carolyn J. [12 ]
Santure, Anna W. [13 ]
Steeves, Tammy E. [2 ]
机构
[1] Boise State Univ, Dept Biol Sci, Boise, ID 83725 USA
[2] Univ Canterbury, Sch Biol Sci, Christchurch, New Zealand
[3] New Zealand Dept Conservat, Canterbury, New Zealand
[4] Te Runanga Ngai Tahu, Te Whare Waipounamu, Canterbury, New Zealand
[5] New Zealand Dept Conservat, Invercargill, New Zealand
[6] Smithsonian Mason Sch Conservat, Front Royal, MD USA
[7] Natl Zool Pk, Smithsonian Conservat Biol Inst, Ctr Species Survival, Washington, DE USA
[8] North Dakota State Univ, Dept Biol Sci, Fargo, ND USA
[9] Univ Wisconsin Milwaukee, Dept Biol Sci, Milwaukee, WI USA
[10] Univ Nevada Reno, Program Ecol Evolut & Conservat Biol, Dept Nat Resources & Environm Sci, Reno, NV USA
[11] Isaac Conservat & Wildlife Trust, Canterbury, New Zealand
[12] Univ Sydney, Sch Life & Environm Sci, Sydney, NSW, Australia
[13] Univ Auckland, Sch Biol Sci, Auckland, New Zealand
基金
美国国家科学基金会;
关键词
conservation genomics; ex situ; in situ; kinship; pedigree; quantitative genetics; CAPTIVE BREEDING PROGRAMS; GENETIC MANAGEMENT; MOLECULAR-DATA; POPULATION; FUTURE; RELATEDNESS; DIVERSITY; PARENTAGE; REVEALS; WILD;
D O I
10.1111/mec.16192
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
Over the past 50 years conservation genetics has developed a substantive toolbox to inform species management. One of the most long-standing tools available to manage genetics-the pedigree-has been widely used to characterize diversity and maximize evolutionary potential in threatened populations. Now, with the ability to use high throughput sequencing to estimate relatedness, inbreeding, and genome-wide functional diversity, some have asked whether it is warranted for conservation biologists to continue collecting and collating pedigrees for species management. In this perspective, we argue that pedigrees remain a relevant tool, and when combined with genomic data, create an invaluable resource for conservation genomic management. Genomic data can address pedigree pitfalls (e.g., founder relatedness, missing data, uncertainty), and in return robust pedigrees allow for more nuanced research design, including well-informed sampling strategies and quantitative analyses (e.g., heritability, linkage) to better inform genomic inquiry. We further contend that building and maintaining pedigrees provides an opportunity to strengthen trusted relationships among conservation researchers, practitioners, Indigenous Peoples, and Local Communities.
引用
收藏
页码:41 / 54
页数:14
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