Phylogenetic history demonstrates two different lineages of dengue type 1 virus in Colombia

被引:39
|
作者
Mendez, Jairo A. [1 ,4 ]
Usme-Ciro, Jose A. [2 ]
Domingo, Cristina [3 ]
Rey, Gloria J. [1 ]
Sanchez, Juan A. [4 ]
Tenorio, Antonio [3 ]
Gallego-Gomez, Juan C. [2 ]
机构
[1] Inst Nacl Salud, Virol Lab, Bogota, DC, Colombia
[2] Univ Antioquia, Sede Invest Univ, Neurosci Grp, Medellin 1226, Colombia
[3] Inst Salud Carlos III, Ctr Nacl Microbiol, Lab Arbovirus & Enfermedades Viricas Importadas, Madrid 28220, Spain
[4] Univ Los Andes, Lab BIOMMAR, Fac Ciencias, Dept Ciencias Biol, Bogota, DC, Colombia
关键词
MOLECULAR EVOLUTION; GENETIC-VARIATION; EPIDEMIOLOGY; SELECTION; MICROEVOLUTION; PHYLOGEOGRAPHY; PATHOGENESIS; VIRULENCE; GENOTYPES; HOST;
D O I
10.1186/1743-422X-7-226
中图分类号
Q93 [微生物学];
学科分类号
071005 ; 100705 ;
摘要
Background: Dengue Fever is one of the most important viral re-emergent diseases affecting about 50 million people around the world especially in tropical and sub-tropical countries. In Colombia, the virus was first detected in the earliest 70's when the disease became a major public health concern. Since then, all four serotypes of the virus have been reported. Although most of the huge outbreaks reported in this country have involved dengue virus serotype 1 (DENV 1), there are not studies about its origin, genetic diversity and distribution. Results: We used 224 bp corresponding to the carboxyl terminus of envelope (E) gene from 74 Colombian isolates in order to reconstruct phylogenetic relationships and to estimate time divergences. Analyzed DENV-1 Colombian isolates belonged to the formerly defined genotype V. Only one virus isolate was clasified in the genotype I, likely representing a sole introduction that did not spread. The oldest strains were closely related to those detected for the first time in America in 1977 from the Caribbean and were detected for two years until their disappearance about six years later. Around 1987, a split up generated 2 lineages that have been evolving separately, although not major aminoacid changes in the analyzed region were found. Conclusion: DENV-1 has been circulating since 1978 in Colombia. Yet, the phylogenetic relationships between strains isolated along the covered period of time suggests that viral strains detected in some years, although belonging to the same genotype V, have different recent origins corresponding to multiple re-introduction events of viral strains that were circulating in neighbor countries. Viral strains used in the present study did not form a monophyletic group, which is evidence of a polyphyletic origin. We report the rapid spread patterns and high evolution rate of the different DENV-1 lineages.
引用
收藏
页数:12
相关论文
共 50 条
  • [41] Two different dengue virus strains in the Japanese epidemics of 2014
    Nakayama, Eri
    Kotaki, Akira
    Tajima, Shigeru
    Kawada, Miki
    Miura, Kuniharu
    Gemma, Aki
    Adachi, Takuya
    Sekizuka, Tsuyoshi
    Kato, Kengo
    Yamashita, Akifumi
    Moi, Meng Ling
    Ikeda, Makiko
    Yagasaki, Kazumi
    Shibasaki, Kenichi
    Saijo, Masayuki
    Kuroda, Makoto
    Takasaki, Tomohiko
    VIRUS GENES, 2016, 52 (05) : 722 - 726
  • [42] Two different dengue virus strains in the Japanese epidemics of 2014
    Eri Nakayama
    Akira Kotaki
    Shigeru Tajima
    Miki Kawada
    Kuniharu Miura
    Aki Gemma
    Takuya Adachi
    Tsuyoshi Sekizuka
    Kengo Kato
    Akifumi Yamashita
    Meng Ling Moi
    Makiko Ikeda
    Kazumi Yagasaki
    Kenichi Shibasaki
    Masayuki Saijo
    Makoto Kuroda
    Tomohiko Takasaki
    Virus Genes, 2016, 52 : 722 - 726
  • [43] Molecular epidemiology of dengue in the Pacific: introduction of two distinct strains of the dengue 2 type-1 virus into Hawaii
    Imrie, A.
    Zhao, Z.
    Bennett, S. N.
    Kitsutani, P.
    Laille, M.
    Effler, P.
    ANNALS OF TROPICAL MEDICINE AND PARASITOLOGY, 2006, 100 (04): : 327 - 336
  • [44] Phylogenetic features of hemagglutin gene in canine distemper virus strains from different genetic lineages
    Liao, Peng
    Guo, Li
    Wen, Yongjun
    Yang, Yangling
    Cheng, Shipeng
    INTERNATIONAL JOURNAL OF CLINICAL AND EXPERIMENTAL MEDICINE, 2015, 8 (04): : 6607 - +
  • [45] Genomic mosaicism in two strains of dengue virus type 3
    Villabona-Arenas, Christian Julian
    de Brito, Anderson Fernandes
    de Andrade Zanotto, Paolo Marinho
    INFECTION GENETICS AND EVOLUTION, 2013, 18 : 202 - 212
  • [46] Nucleotide sequence and phylogenetic analyses of dengue type 2 virus isolated in the Dominican Republic
    Anzai, S
    Fukuda, M
    Otsuka, Y
    Eshita, Y
    VIRUS GENES, 2004, 29 (02) : 219 - 227
  • [47] Nucleotide Sequence and Phylogenetic Analyses of Dengue Type 2 Virus Isolated in the Dominican Republic
    Saburo Anzai
    Masako Fukuda
    Yasushi Otsuka
    Yuki Eshita
    Virus Genes, 2004, 29 : 219 - 227
  • [48] GENETIC VARIABILITY OF DENGUE VIRUS TYPE 2 AND CLINICAL OUTCOME DURING THE 2009-2010 EPIDEMIC OF DENGUE IN COLOMBIA
    Gelvez, Margarita
    Castillo, Jorge Andres
    Diaz, Francisco Javier
    Herrera, Victor Mauricio
    Villar, Luis Angel
    AMERICAN JOURNAL OF TROPICAL MEDICINE AND HYGIENE, 2017, 95 (05): : 427 - 427
  • [49] Evolutionary history and spatio-temporal dynamics of dengue virus serotypes in an endemic region of Colombia
    Jimeaez-Silva, Cinthy L.
    Fernanda Carreno, Maria
    Susana Ortiz-Baez, Ayda
    Aida Rey, Luz
    Villabona-Arenas, Christian Julian
    Ocazionez, Raquel E.
    PLOS ONE, 2018, 13 (08):
  • [50] Evolutionary history of Dengue virus type 4: Insights into genotype phylodynamics
    Villabona-Arenas, Christian Julian
    de Andrade Zanotto, Paolo Marinho
    INFECTION GENETICS AND EVOLUTION, 2011, 11 (05) : 878 - 885