Alternative mRNA polyadenylation in eukaryotes: an effective regulator of gene expression

被引:114
|
作者
Lutz, Carol S. [1 ]
Moreira, Alexandra [2 ]
机构
[1] Univ Med & Dent New Jersey, New Jersey Med Sch, Dept Biochem & Mol Biol, Newark, NJ 07103 USA
[2] Univ Porto, Inst Biol Mol & Celular, P-4100 Oporto, Portugal
关键词
3' UNTRANSLATED REGIONS; DROSOPHILA-MELANOGASTER; BINDING-PROTEIN; END FORMATION; ELEMENTS; MOUSE; SUPPRESSOR; EFFICIENCY; MECHANISM; SEQUENCE;
D O I
10.1002/wrna.47
中图分类号
Q2 [细胞生物学];
学科分类号
071009 ; 090102 ;
摘要
Alternative RNA processing mechanisms, including alternative splicing and alternative polyadenylation, are increasingly recognized as important regulators of gene expression. This article will focus on what has recently been described about alternative polyadenylation in development, differentiation, and disease in higher eukaryotes. We will also describe how the evolving global methodologies for examining the cellular transcriptome, both experimental and bioinformatic, are revealing new details about the complex nature of alternative 3' end formation as well as interactions with other RNA-mediated and RNA processing mechanisms. (C) 2010 John Wiley & Sons, Ltd. WIREs RNA 2010 DOI: 10.1002/wrna.47
引用
收藏
页码:22 / 31
页数:10
相关论文
共 50 条
  • [21] Antisense transcription regulates the expression of sense gene via alternative polyadenylation
    Shen, Ting
    Li, Huan
    Song, Yifan
    Yao, Jun
    Han, Miao
    Yu, Ming
    Wei, Gang
    Ni, Ting
    PROTEIN & CELL, 2018, 9 (06) : 540 - 552
  • [22] Alternative polyadenylation drives oncogenic gene expression in pancreatic ductal adenocarcinoma
    Venkat, Swati
    Tisdale, Arwen A.
    Schwarz, Johann R.
    Alahmari, Abdulrahman
    Maurer, H. Carlo
    Olive, Kenneth
    Eng, Kevin H.
    Feigin, Michael E.
    GENOME RESEARCH, 2020, 30 (03) : 347 - 360
  • [23] Distinct regulation of alternative polyadenylation and gene expression by nuclear poly(A) polymerases
    Li, Weimin
    Li, Wencheng
    Laishram, Rakesh S.
    Hoque, Mainul
    Ji, Zhe
    Tian, Bin
    Anderson, Richard A.
    NUCLEIC ACIDS RESEARCH, 2017, 45 (15) : 8930 - 8942
  • [24] Developmental dynamics of gene expression and alternative polyadenylation in the Caenorhabditis elegans germline
    West, Sean M.
    Mecenas, Desirea
    Gutwein, Michelle
    Aristizabal-Corrales, David
    Piano, Fabio
    Gunsalus, Kristin C.
    GENOME BIOLOGY, 2018, 19
  • [25] Cleavage factor Im (CFIm) as a regulator of alternative polyadenylation
    Hardy, Jessica G.
    Norbury, Chris J.
    BIOCHEMICAL SOCIETY TRANSACTIONS, 2016, 44 : 1051 - 1057
  • [26] Polyadenylation of mRNA as a novel regulatory mechanism of gene expression in temporal lobe epilepsy
    Parras, Alberto
    De Diego-Garcia, Laura
    Alves, Mariana
    Beamer, Edward
    Conte, Giorgia
    Jimenez-Mateos, Eva M.
    Morgan, James
    Olla, Ivana
    Hernandez-Santana, Yasmina
    Delanty, Norman
    Farrell, Michael A.
    O'Brien, Donncha F.
    Ocampo, Alejandro
    Henshall, David C.
    Mendez, Raul
    Lucas, Jose J.
    Engel, Tobias
    BRAIN, 2020, 143 : 2139 - 2153
  • [27] Signatures of mRNA Alternative Polyadenylation in Arabidopsis Leaf Development
    Yu, Zhibo
    Hong, Liwei
    Li, Qingshun Q.
    FRONTIERS IN GENETICS, 2022, 13
  • [28] Alternative Polyadenylation: A Twist on mRNA 3′ End Formation
    Lutz, Carol S.
    ACS CHEMICAL BIOLOGY, 2008, 3 (10) : 609 - 617
  • [29] QuantifyPoly(A): reshaping alternative polyadenylation landscapes of eukaryotes with weighted density peak clustering
    Ye, Congting
    Zhao, Danhui
    Ye, Wenbin
    Wu, Xiaohui
    Ji, Guoli
    Li, Qingshun Q.
    Lin, Juncheng
    BRIEFINGS IN BIOINFORMATICS, 2021, 22 (06)
  • [30] Simultaneous studies of gene expression and alternative polyadenylation in primary human immune cells
    Wilton, Joana
    Tellier, Michael
    Nojima, Takayuki
    Costa, Angela M.
    Oliveira, Maria Jose
    Moreira, Alexandra
    MRNA 3' END PROCESSING AND METABOLISM, 2021, 655 : 349 - 399