Neural ensemble communities: open-source approaches to hardware for large-scale electrophysiology

被引:28
|
作者
Siegle, Joshua H. [1 ]
Hale, Gregory J. [1 ]
Newman, Jonathan P. [1 ]
Voigts, Jakob [1 ]
机构
[1] MIT, Dept Brain & Cognit Sci, Cambridge, MA 02139 USA
基金
美国国家科学基金会;
关键词
DENSITY MICROELECTRODE ARRAY; OPTICAL CONTROL; DATA-ACQUISITION; DYNAMICS; TOOLBOX; NEURONS; REPLAY; CODE;
D O I
10.1016/j.conb.2014.11.004
中图分类号
Q189 [神经科学];
学科分类号
071006 ;
摘要
One often-overlooked factor when selecting a platform for large-scale electrophysiology is whether or not a particular data acquisition system is 'open' or 'closed': that is, whether or not the system's schematics and source code are available to end users. Open systems have a reputation for being difficult to acquire, poorly documented, and hard to maintain. With the arrival of more powerful and compact integrated circuits, rapid prototyping services, and web-based tools for collaborative development, these stereotypes must be reconsidered. We discuss some of the reasons why multichannel extracellular electrophysiology could benefit from open-source approaches and describe examples of successful community-driven tool development within this field. In order to promote the adoption of open-source hardware and to reduce the need for redundant development efforts, we advocate a move toward standardized interfaces that connect each element of the data processing pipeline. This will give researchers the flexibility to modify their tools when necessary, while allowing them to continue to benefit from the high-quality products and expertise provided by commercial vendors.
引用
收藏
页码:53 / 59
页数:7
相关论文
共 50 条
  • [41] Integrated open-source software for multiscale electrophysiology
    Konstantinos Nasiotis
    Martin Cousineau
    François Tadel
    Adrien Peyrache
    Richard M. Leahy
    Christopher C. Pack
    Sylvain Baillet
    Scientific Data, 6
  • [42] TAKE ADVANTAGE of OPEN-SOURCE HARDWARE
    Coley, Gerald
    EDN, 2009, 54 (16) : 20 - 23
  • [43] Cut costs with open-source hardware
    Pearce, Joshua M.
    NATURE, 2014, 505 (7485) : 618 - 618
  • [44] Cut costs with open-source hardware
    Joshua M. Pearce
    Nature, 2014, 505 : 618 - 618
  • [45] Open-Source Applications of TCPA Hardware
    Faez, Karim
    Karimabad, Ashkan Hassani
    INTERNATIONAL JOURNAL OF COMPUTER SCIENCE AND NETWORK SECURITY, 2007, 7 (03): : 161 - 168
  • [46] Take advantage of open-source hardware
    Coley, Gerald
    EDN, 2009, 54 (17) : 20 - 23
  • [47] Open-source hardware in controls education
    Hopkins, Mark A.
    Kibbe, Alexander Michael
    2014 ASEE ANNUAL CONFERENCE, 2014,
  • [48] RELIABLE DATA PROFILING FOR ENERGY COMMUNITIES - REVIEW OF OPEN-SOURCE APPROACHES
    Kairisa, E.
    Mutule, A.
    LATVIAN JOURNAL OF PHYSICS AND TECHNICAL SCIENCES, 2023, 60 (02) : 17 - 30
  • [49] Identifying and characterizing change-prone classes in two large-scale open-source products
    Koru, A. Guenes
    Liu, Hongfang
    JOURNAL OF SYSTEMS AND SOFTWARE, 2007, 80 (01) : 63 - 73
  • [50] Interpreting Large-Scale Attacks Against Open-Source Medical Systems Using eXplainable AI
    Lu, Wei
    COMPLEX, INTELLIGENT AND SOFTWARE INTENSIVE SYSTEMS, CISIS-2024, 2024, 87 : 60 - 71