Transfer language space with similar domain adaptation: a case study with hepatocellular carcinoma

被引:2
|
作者
Tariq, Amara [1 ]
Kallas, Omar [2 ]
Balthazar, Patricia [2 ]
Lee, Scott Jeffery [2 ]
Desser, Terry [3 ]
Rubin, Daniel [3 ,4 ]
Gichoya, Judy Wawira [1 ]
Banerjee, Imon [1 ]
机构
[1] Mayo Clin, Machine Intelligence Med & Imaging MI 2 Lab, Phoenix, AZ 85054 USA
[2] Emory Univ, Dept Radiol, Atlanta, GA 30322 USA
[3] Stanford Univ, Dept Radiol, Palo Alto, CA 94304 USA
[4] Stanford Univ, Dept Biomed Data Sci, Palo Alto, CA USA
关键词
Transfer learning; Language model; Radiology report; BERT; Word2vec;
D O I
10.1186/s13326-022-00262-8
中图分类号
Q [生物科学];
学科分类号
07 ; 0710 ; 09 ;
摘要
Background Transfer learning is a common practice in image classification with deep learning where the available data is often limited for training a complex model with millions of parameters. However, transferring language models requires special attention since cross-domain vocabularies (e.g. between two different modalities MR and US) do not always overlap as the pixel intensity range overlaps mostly for images. Method We present a concept of similar domain adaptation where we transfer inter-institutional language models (context-dependent and context-independent) between two different modalities (ultrasound and MRI) to capture liver abnormalities. Results We use MR and US screening exam reports for hepatocellular carcinoma as the use-case and apply the transfer language space strategy to automatically label imaging exams with and without structured template with > 0.9 average f1-score. Conclusion We conclude that transfer learning along with fine-tuning the discriminative model is often more effective for performing shared targeted tasks than the training for a language space from scratch.
引用
收藏
页数:12
相关论文
共 50 条
  • [21] The chimeric multi-domain proteins mediating specific DNA transfer for hepatocellular carcinoma treatment
    Yang, Encheng
    Li, Xiao
    Jin, Ningyi
    CANCER CELL INTERNATIONAL, 2016, 16
  • [22] LANGUAGE AND CULTURE IN THE CLASSROOM SPACE: THE CASE STUDY OF A FOREIGN LANGUAGE ASSISTANT IN RUSSIA
    Nurdin, Kevin
    DeWitt, Dorothy
    Sukhoverkhov, Anton, V
    TOMSK STATE UNIVERSITY JOURNAL, 2020, (456): : 197 - 204
  • [23] Hepatocellular carcinoma and occupation in men:: A case-control study
    Ferrand, Jean-Francois
    Cenee, Sylvie
    Laurent-Puig, Pierre
    Loriot, Marie-Anne
    Trinchet, Jean Claude
    Degos, Francoise
    Bronovicky, Jean-Pierre
    Pelletier, Gilles
    Stucker, Isabelle
    JOURNAL OF OCCUPATIONAL AND ENVIRONMENTAL MEDICINE, 2008, 50 (02) : 212 - 220
  • [24] SPONTANEOUS REGRESSION OF HEPATOCELLULAR-CARCINOMA - A CASE-STUDY
    LAM, KC
    HO, JCI
    YEUNG, RTT
    CANCER, 1982, 50 (02) : 332 - 336
  • [25] Case study: uterine arteriovenous malformation in a patient with hepatocellular carcinoma
    Mittermeier, T.
    Thota, S.
    Harkett, R.
    Chittenden, B.
    BJOG-AN INTERNATIONAL JOURNAL OF OBSTETRICS AND GYNAECOLOGY, 2015, 122 : 88 - 88
  • [26] Diet and hepatocellular carcinoma: A case-control study in Greece
    Kuper, H
    Tzonou, A
    Lagiou, P
    Mucci, LA
    Trichopoulos, D
    Stuver, SO
    Trichopoulou, A
    NUTRITION AND CANCER-AN INTERNATIONAL JOURNAL, 2000, 38 (01): : 6 - 12
  • [27] A CASE - CONTROL STUDY OF PRIMARY HEPATOCELLULAR-CARCINOMA IN TAIWAN
    LU, SN
    LIN, TM
    CHEN, CJ
    CHEN, JS
    LIAW, YF
    CHANG, WY
    HSU, ST
    CANCER, 1988, 62 (09) : 2051 - 2055
  • [28] WebDSL: A Case Study in Domain-Specific Language Engineering
    Visser, Eelco
    GENERATIVE AND TRANSFORMATIONAL TECHNIQUES IN SOFTWARE ENGINEERING II, 2008, 5235 : 291 - 373
  • [29] Domain Adaptation for Arabic Machine Translation: Financial Texts as a Case Study
    Alghamdi, Emad A.
    Zakraoui, Jezia
    Abanmy, Fares A.
    APPLIED SCIENCES-BASEL, 2024, 14 (16):
  • [30] Types of language adaptation among immigrant students in Spain: a case study
    Alvarez-Sotomayor, Alberto
    Elena Gomez-Parra, Ma
    LENGUA Y MIGRACION-LANGUAGE AND MIGRATION, 2020, 12 (01): : 77 - 99