Transfer language space with similar domain adaptation: a case study with hepatocellular carcinoma

被引:2
|
作者
Tariq, Amara [1 ]
Kallas, Omar [2 ]
Balthazar, Patricia [2 ]
Lee, Scott Jeffery [2 ]
Desser, Terry [3 ]
Rubin, Daniel [3 ,4 ]
Gichoya, Judy Wawira [1 ]
Banerjee, Imon [1 ]
机构
[1] Mayo Clin, Machine Intelligence Med & Imaging MI 2 Lab, Phoenix, AZ 85054 USA
[2] Emory Univ, Dept Radiol, Atlanta, GA 30322 USA
[3] Stanford Univ, Dept Radiol, Palo Alto, CA 94304 USA
[4] Stanford Univ, Dept Biomed Data Sci, Palo Alto, CA USA
关键词
Transfer learning; Language model; Radiology report; BERT; Word2vec;
D O I
10.1186/s13326-022-00262-8
中图分类号
Q [生物科学];
学科分类号
07 ; 0710 ; 09 ;
摘要
Background Transfer learning is a common practice in image classification with deep learning where the available data is often limited for training a complex model with millions of parameters. However, transferring language models requires special attention since cross-domain vocabularies (e.g. between two different modalities MR and US) do not always overlap as the pixel intensity range overlaps mostly for images. Method We present a concept of similar domain adaptation where we transfer inter-institutional language models (context-dependent and context-independent) between two different modalities (ultrasound and MRI) to capture liver abnormalities. Results We use MR and US screening exam reports for hepatocellular carcinoma as the use-case and apply the transfer language space strategy to automatically label imaging exams with and without structured template with > 0.9 average f1-score. Conclusion We conclude that transfer learning along with fine-tuning the discriminative model is often more effective for performing shared targeted tasks than the training for a language space from scratch.
引用
收藏
页数:12
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