MicrobiomeExplorer. an R package for the analysis and visualization of microbial communities

被引：12
|
作者：
Reeder, Janina [1 ]
Huang, Mo [2 ,3 ]
Kaminker, Joshua S. [1 ]
Paulson, Joseph N. [3 ]
机构：
[1] Genentech Inc, Dept OMNI Bioinformat, San Francisco, CA 94080 USA
[2] Univ Penn, Wharton Sch, Dept Stat, Philadelphia, PA 19104 USA
[3] Genentech Inc, Dept Biostat, San Francisco, CA 94080 USA
来源：
BIOINFORMATICS | 2021年 / 37卷 / 09期
关键词：
D O I：
10.1093/bioinformatics/btaa838
中图分类号：
Q5 [生物化学];
学科分类号：
071010 ; 081704 ;
摘要：
We developed the MicrobiomeExplorer R package to facilitate the analysis and visualization of microbial communities. The MicrobiomeExplorer R package allows a user to perform typical microbiome analytic workflows and visualize their results, either through the command line or an interactive Shiny application included with the package. In addition to applying common analytical workflows, the application enables automated analysis report generation.
引用
收藏
页码：1317 / 1318
页数：2
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