poRe: an R package for the visualization and analysis of nanopore sequencing data

被引：55
|
作者：
Watson, Mick [1 ,2 ]
Thomson, Marian [3 ]
Risse, Judith [3 ]
Talbot, Richard [1 ]
Santoyo-Lopez, Javier [3 ]
Gharbi, Karim [3 ]
Blaxter, Mark [3 ]
机构：
[1] Univ Edinburgh, Roslin Inst, Edinburgh Genom, Edinburgh EH25 9RG, Midlothian, Scotland
[2] Univ Edinburgh, RD SVS, Edinburgh EH25 9RG, Midlothian, Scotland
[3] Univ Edinburgh, Edinburgh Genom, Inst Evolutionary Biol, Ashworth Labs, Edinburgh EH9 3JT, Midlothian, Scotland
来源：
BIOINFORMATICS | 2015年 / 31卷 / 01期
基金：
英国医学研究理事会; 英国生物技术与生命科学研究理事会;
关键词：
D O I：
10.1093/bioinformatics/btu590
中图分类号：
Q5 [生物化学];
学科分类号：
071010 ; 081704 ;
摘要：
Motivation: The Oxford Nanopore MinION device represents a unique sequencing technology. As a mobile sequencing device powered by the USB port of a laptop, the MinION has huge potential applications. To enable these applications, the bioinformatics community will need to design and build a suite of tools specifically for MinION data. Results: Here we present poRe, a package for R that enables users to manipulate, organize, summarize and visualize MinION nanopore sequencing data. As a package for R, poRe has been tested on Windows, Linux and MacOSX. Crucially, the Windows version allows users to analyse MinION data on the Windows laptop attached to the device.
引用
收藏
页码：114 / 115
页数：2
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