AAindex: Amino Acid Index Database

被引:244
|
作者
Kawashima, S [1 ]
Ogata, H [1 ]
Kanehisa, M [1 ]
机构
[1] Kyoto Univ, Inst Chem Res, Kyoto 6110011, Japan
关键词
D O I
10.1093/nar/27.1.368
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
AAindex is a database of numerical indices representing various physicochemical and biochemical properties of amino acids and pairs of amino acids. It consists of two sections: AAindex1 for the amino acid index of 20 numerical values and AAindex2 for the amino acid mutation matrix of 210 numerical values, Each entry of either AAindex1 or AAindex2 consists of the definition, the reference information, a list of related entries in terms of the correlation coefficient, and the actual data. The database may be accessed through the DBGET/LinkDB system at GenomeNet (http://www.genome.ad.jp/dbget/) or may be downloaded by anonymous FTP (ftp://ftp.genome.ad.jp/db/genomenet/aaindex/).
引用
收藏
页码:368 / 369
页数:2
相关论文
共 50 条
  • [31] Nabe: an energetic database of amino acid mutations in protein-nucleic acid binding interfaces
    Liu, Junyi
    Liu, Siyu
    Liu, Chenzhe
    Zhang, Yaping
    Pan, Yuliang
    Wang, Zixiang
    Wang, Jiacheng
    Wen, Ting
    Deng, Lei
    DATABASE-THE JOURNAL OF BIOLOGICAL DATABASES AND CURATION, 2021,
  • [32] dbSAP: single amino-acid polymorphism database for protein variation detection
    Cao, Ruifang
    Shi, Yan
    Chen, Shuangguan
    Ma, Yimin
    Chen, Jiajun
    Yang, Juan
    Chen, Geng
    Shi, Tieliu
    NUCLEIC ACIDS RESEARCH, 2017, 45 (D1) : D827 - D832
  • [33] SECOST: sequence-conformation-structure database for amino acid residues in proteins
    Shats, O
    Vaisman, II
    Shats, A
    Sherman, S
    BIOINFORMATICS, 1999, 15 (06) : 525 - 526
  • [34] DescribePROT: database of amino acid-level protein structure and function predictions
    Zhao, Bi
    Katuwawala, Akila
    Oldfield, Christopher J.
    Dunker, A. Keith
    Faraggi, Eshel
    Gsponer, Jorg
    Kloczkowski, Andrzej
    Malhis, Nawar
    Mirdita, Milot
    Obradovic, Zoran
    Soding, Johannes
    Steinegger, Martin
    Zhou, Yaoqi
    Kurgan, Lukasz
    NUCLEIC ACIDS RESEARCH, 2021, 49 (D1) : D298 - D308
  • [35] Introduction and validation of an invariom database for amino-acid, peptide and protein molecules
    Dittrich, B.
    Huebschle, C. B.
    Luger, P.
    Spackman, M. A.
    ACTA CRYSTALLOGRAPHICA SECTION D-STRUCTURAL BIOLOGY, 2006, 62 : 1325 - 1335
  • [36] The DBSAV Database: Predicting Deleteriousness of Single Amino Acid Variations in the Human Proteome
    Pei, Jimin
    Grishin, Nick, V
    JOURNAL OF MOLECULAR BIOLOGY, 2021, 433 (11)
  • [37] Effective Fragment Potentials for Flexible Molecules: Transferability of Parameters and Amino Acid Database
    Kim, Yongbin
    Bui, Yen
    Tazhigulov, Ruslan N.
    Bravaya, Ksenia B.
    Slipchenko, Lyudmila, V
    JOURNAL OF CHEMICAL THEORY AND COMPUTATION, 2020, 16 (12) : 7735 - 7747
  • [38] RepSeq-A database of amino acid repeats present in lower eukaryotic pathogens
    Depledge, Daniel P.
    Lower, Ryan P. J.
    Smith, Deborah F.
    BMC BIOINFORMATICS, 2007, 8 (1)
  • [39] INDEX DATABASE MACHINE
    PRAMANIK, S
    FOTOUHI, F
    COMPUTER JOURNAL, 1986, 29 (05): : 451 - 457
  • [40] DATABASE SUBJECT INDEX
    TEITELBAUM, HH
    HAWKINS, DT
    ONLINE, 1978, 2 (02): : 16 - 21