A new approach to automated peak detection

被引:58
|
作者
Jarman, KH [1 ]
Daly, DS [1 ]
Anderson, KK [1 ]
Wahl, KL [1 ]
机构
[1] Pacific NW Natl Lab, Richland, WA 99352 USA
关键词
peak detection; peak identification; matrix-assisted laser desorption/ionization mass spectrometry; MALDI mass spectrometry; CHROMATOGRAPHY-MASS SPECTROMETRY; RECOGNITION; SPECTRA;
D O I
10.1016/S0169-7439(03)00113-8
中图分类号
TP [自动化技术、计算机技术];
学科分类号
0812 ;
摘要
Spectral peak detection algorithms are often difficult to automate because they either rely on somewhat arbitrary rules, or are tuned to specific spectral peak properties. One popular approach detects peaks where signal intensities exceed some threshold. This threshold is typically set arbitrarily above the noise level or manually by the user. Intensity threshold-based methods can be sensitive to baseline variations and signal intensity. Another popular peak detection approach relies on matching the spectral intensities to a reference peak shape. This approach can be very sensitive to baseline changes and deviations from the reference peak shape. Such methods can be significantly challenged by modem analytical instrumentation where the baseline tends to drift, peaks of interest may have a low signal to noise (S/N) ratio, and no well-defined reference peak shape is available. We present a new approach for spectral peak detection that is designed to be generic and easily automated. Employing a histogram-based model for spectral intensity, peaks are detected by comparing the estimated variance of observations (the x-axis of the spectrum) to the expected variance when no peak is present inside some window of interest. We compare an implementation of this approach to two existing peak detection algorithms using a series of simulated spectra. (C) 2003 Elsevier B.V. All rights reserved.
引用
收藏
页码:61 / 76
页数:16
相关论文
共 50 条
  • [31] A NEW APPROACH TO AUTOMATED MUSEUM DOCUMENTATION
    PAIJMANS, JJ
    VERRIJNSTUART, AA
    COMPUTERS AND THE HUMANITIES, 1982, 16 (03): : 145 - 155
  • [32] MASTER: a new approach for an automated observatory
    Di Paola, A
    D'Alessio, F
    Pedichini, F
    Speziali, R
    ADVANCED TELESCOPE AND INSTRUMENTATION CONTROL SOFTWARE, 2000, 4009 : 317 - 326
  • [33] NMRNet: a deep learning approach to automated peak picking of protein NMR spectra
    Klukowski, Piotr
    Augoff, Michal
    Zieba, Maciej
    Drwal, Maciej
    Gonczarek, Adam
    Walczak, Michal J.
    BIOINFORMATICS, 2018, 34 (15) : 2590 - 2597
  • [34] NEW METHOD FOR REPRESENTATION OF PEAK DETECTION - GE(LI)
    LIBERT, J
    NUCLEAR INSTRUMENTS & METHODS, 1973, 109 (03): : 609 - 611
  • [35] Automated asteroseismic peak detections
    de Montellano, Andres Garcia Saravia Ortiz
    Hekker, S.
    Themessl, N.
    MONTHLY NOTICES OF THE ROYAL ASTRONOMICAL SOCIETY, 2018, 476 (02) : 1470 - 1496
  • [36] Bayesian Approach for Peak Detection in Two-Dimensional Chromatography
    Vivo-Truyols, Gabriel
    ANALYTICAL CHEMISTRY, 2012, 84 (06) : 2622 - 2630
  • [37] A Novel Approach to Peak Detection Using Sequential Learning Algorithm
    Sumukha, B. N.
    Kumar, R. Chandan
    Bharadwaj, Skanda S.
    George, Koshy
    PROCEEDINGS OF THE 2016 2ND INTERNATIONAL CONFERENCE ON CONTEMPORARY COMPUTING AND INFORMATICS (IC3I), 2016, : 862 - 867
  • [38] Peak-tree: A new approach to image simplification
    Kundu, S
    VISION GEOMETRY VIII, 1999, 3811 : 284 - 294
  • [39] Fully Automated R-peak Detection Algorithm (FLORA) for fetal magnetoencephalographic data
    Sippel, Katrin
    Moser, Julia
    Schleger, Franziska
    Preissl, Hubert
    Rosenstiel, Wolfgang
    Spueler, Martin
    COMPUTER METHODS AND PROGRAMS IN BIOMEDICINE, 2019, 173 : 35 - 41
  • [40] Fully Automated Spectral Envelope and Peak Velocity Detection from Doppler Echocardiography Images
    Zamzmi, Ghada
    Hsu, Li-Yueh
    Li, Wen
    Sachdev, Vandana
    Antani, Sameer
    MEDICAL IMAGING 2020: COMPUTER-AIDED DIAGNOSIS, 2020, 11314