Integrated digital pathology at scale: A solution for clinical diagnostics and cancer research at a large academic medical center

被引:28
|
作者
Schueffler, Peter J. [1 ,2 ]
Geneslaw, Luke [1 ]
Yarlagadda, D. Vijay K. [1 ]
Hanna, Matthew G. [1 ]
Samboy, Jennifer [1 ]
Stamelos, Evangelos [1 ]
Vanderbilt, Chad [1 ]
Philip, John [1 ,3 ]
Jean, Marc-Henri [1 ]
Corsale, Lorraine [1 ]
Manzo, Allyne [1 ]
Paramasivam, Neeraj H. G. [4 ]
Ziegler, John S. [1 ]
Gao, Jianjiong [5 ]
Perin, Juan C. [4 ]
Kim, Young Suk [6 ]
Bhanot, Umeshkumar K. [1 ]
Roehrl, Michael H. A. [1 ,7 ]
Ardon, Orly [1 ]
Chiang, Sarah [1 ]
Giri, Dilip D. [1 ]
Sigel, Carlie S. [1 ]
Tan, Lee K. [1 ]
Murray, Melissa [1 ]
Virgo, Christina [1 ]
England, Christine [1 ]
Yagi, Yukako [1 ]
Sirintrapun, S. Joseph [1 ]
Klimstra, David [1 ]
Hameed, Meera [1 ]
Reuter, Victor E. [1 ]
Fuchs, Thomas J. [1 ,8 ]
机构
[1] Mem Sloan Kettering Canc Ctr, Dept Pathol, 1275 York Ave, New York, NY 10021 USA
[2] Tech Univ Munich, Inst Pathol, Munich, Germany
[3] Mem Sloan Kettering Canc Ctr, Dept Hlth Informat, 1275 York Ave, New York, NY 10021 USA
[4] Mem Sloan Kettering Canc Ctr, Dept Informat Syst, 1275 York Ave, New York, NY 10021 USA
[5] Mem Sloan Kettering Canc Ctr, Dept Epidemiol & Biostat, New York, NY 10021 USA
[6] Stanford Univ, Sch Med, Stanford, CA 94305 USA
[7] Mem Sloan Kettering Canc Ctr, Human Oncol & Pathogenesis Program, 1275 York Ave, New York, NY 10021 USA
[8] Icahn Sch Med Mt Sinai, Dept Pathol, New York, NY 10029 USA
基金
美国国家卫生研究院;
关键词
digital pathology; whole slide imaging; computational pathology; artificial intelligence; honest broker; pathology; WHOLE SLIDE IMAGES; LIGHT-MICROSCOPY; SURGICAL PATHOLOGY; VALIDATION; CONCORDANCE; PLATFORM; IMPLEMENTATION;
D O I
10.1093/jamia/ocab085
中图分类号
TP [自动化技术、计算机技术];
学科分类号
0812 ;
摘要
Objective: Broad adoption of digital pathology (DP) is still lacking, and examples for DP connecting diagnostic, research, and educational use cases are missing. We blueprint a holistic DP solution at a large academic medical center ubiquitously integrated into clinical workflows; researchapplications including molecular, genetic, and tissue databases; and educational processes. Materials and Methods: We built a vendor-agnostic, integrated viewer for reviewing, annotating, sharing, and quality assurance of digital slides in a clinical or research context. It is the first homegrown viewer cleared by New York State provisional approval in 2020 for primary diagnosis and remote sign-out during the COVID-19 (coronavirus disease 2019) pandemic. We further introduce an interconnected Honest Broker for BioInformatics Technology (HoBBIT) to systematically compile and share large-scale DP research datasets including anonymized images, redacted pathology reports, and clinical data of patients with consent. Results: The solution has been operationally used over 3 years by 926 pathologists and researchers evaluating 288 903 digital slides. A total of 51% of these were reviewed within 1 month after scanning. Seamless integration of the viewer into 4 hospital systems clearly increases the adoption of DP. HoBBIT directly impacts the translation of knowledge in pathology into effective new health measures, including artificial intelligence-driven detection models for prostate cancer, basal cell carcinoma, and breast cancer metastases, developed and validated on thousands of cases. Conclusions: We highlight major challenges and lessons learned when going digital to provide orientation for other pathologists. Building interconnected solutions will not only increase adoption of DP, but also facilitate next-generation computational pathology at scale for enhanced cancer research.
引用
收藏
页码:1874 / 1884
页数:11
相关论文
共 50 条
  • [1] Clinical Utility of Large Scale Genomic Sequencing of Solid Tumors at a Large Academic Medical Center
    Brown, N. A.
    Betz, B. L.
    [J]. JOURNAL OF MOLECULAR DIAGNOSTICS, 2017, 19 (06): : 1021 - 1021
  • [2] The Practice of Clinical Pathology A Quantitative Description of Laboratory Director Activities at a Large Academic Medical Center
    Branda, John A.
    Dighe, Anand S.
    Dzik, Walter
    Ferraro, Mary Jane
    Flood, James
    Lee-Lewandrowski, Elizabeth
    Makar, Robert
    Mandokolathur, Murali
    Rosenberg, Eric S.
    Saidman, Susan
    Sluss, Patrick
    Sohani, Aliyah R.
    Stowell, Christopher
    Van Cott, Elizabeth M.
    Lewandrowski, Kent B.
    [J]. AMERICAN JOURNAL OF CLINICAL PATHOLOGY, 2014, 142 (02) : 144 - 149
  • [3] Leveraging retooled clinical research infrastructure for Clinical Research Management System implementation at a large Academic Medical Center
    Mullen, Catherine G.
    Houlihan, Jessica Y.
    Stroo, Marissa
    Deeter, Christine E.
    Freel, Stephanie A.
    Padget, Angela M.
    Snyder, Denise C.
    [J]. JOURNAL OF CLINICAL AND TRANSLATIONAL SCIENCE, 2023, 7 (01)
  • [4] Building digital innovation capacity at a large academic medical center
    Devin M. Mann
    Sara Kuppin Chokshi
    Rachel Lebwohl
    Michael Mainiero
    Catherine Dinh-Le
    Katherine Driscoll
    Steven Robinson
    Helen Egger
    [J]. npj Digital Medicine, 2
  • [5] Building digital innovation capacity at a large academic medical center
    Mann, Devin M.
    Chokshi, Sara Kuppin
    Lebwohl, Rachel
    Mainiero, Michael
    Dinh-Le, Catherine
    Driscoll, Katherine
    Robinson, Steven
    Egger, Helen
    [J]. NPJ DIGITAL MEDICINE, 2019, 2 (1)
  • [6] CLINICAL RESEARCH AND TEACHING IN ACADEMIC MEDICAL-CENTER
    CHALMERS, TC
    [J]. MOUNT SINAI JOURNAL OF MEDICINE, 1977, 44 (05): : 619 - 623
  • [7] Feasibility, safety, and adequacy of research biopsies for cancer clinical trials at an academic medical center
    Lee, Kyoungmin
    Lee, So Jung
    Yoon, Shinkyo
    Ryoo, Baek-Yeol
    Kim, Sang-We
    Choi, Sang Hyun
    Lee, Sang Min
    Chae, Eun Jin
    Park, Yangsoon
    Jang, Se-Jin
    Park, Soo-Yeon
    Yoon, Young-Kwang
    Park, Seong Ho
    Kim, Tae Won
    [J]. PLOS ONE, 2019, 14 (08):
  • [8] Factors associated with breast cancer clinical trials participation and enrollment at a large academic medical center
    Simon, MS
    Du, W
    Flaherty, L
    Philip, PA
    Lorusso, P
    Miree, C
    Smith, D
    Brown, DR
    [J]. JOURNAL OF CLINICAL ONCOLOGY, 2004, 22 (11) : 2046 - 2052
  • [9] BOUNDARIES OF THE GENERAL CLINICAL RESEARCH-CENTER IN AN ACADEMIC MEDICAL-CENTER
    ROSS, RS
    [J]. CLINICAL RESEARCH, 1985, 33 (02): : 105 - 110
  • [10] Development of a pharmacy student research program at a large academic medical center
    Mclaughlin, Milena M.
    Skoglund, Erik
    Bergman, Scott
    Scheetz, Marc H.
    [J]. AMERICAN JOURNAL OF HEALTH-SYSTEM PHARMACY, 2015, 72 (21) : 1885 - 1889