WormBot, an open-source robotics platform for survival and behavior analysis in C. elegans

被引:31
|
作者
Pitt, Jason N. [1 ]
Strait, Nolan L. [1 ]
Vayndorf, Elena M. [1 ]
Blue, Benjamin W. [1 ]
Tran, Christina H. [1 ]
Davis, Brendon E. M. [1 ]
Huang, Karen [1 ]
Johnson, Brock J. [1 ]
Lim, Keong Mu [1 ]
Liu, Sophie [1 ]
Nikjoo, Arash [1 ]
Vaid, Anuj [1 ]
Wu, Judy Z. [1 ]
Kaeberlein, Matt [1 ]
机构
[1] Univ Washington, Dept Pathol, 1959 NE Pacific St, Seattle, WA 98195 USA
关键词
C; elegans; Automated; Survival; Healthspan; Open-source; CAENORHABDITIS-ELEGANS; LIFE-SPAN; LONGEVITY; HEALTHSPAN; GENETICS; LESSONS;
D O I
10.1007/s11357-019-00124-9
中图分类号
R592 [老年病学]; C [社会科学总论];
学科分类号
03 ; 0303 ; 100203 ;
摘要
Caenorhabditis elegans is a popular organism for aging research owing to its highly conserved molecular pathways, short lifespan, small size, and extensive genetic and reverse genetic resources. Here we describe the WormBot, an open-source robotic image capture platform capable of conducting 144 parallel C. elegans survival and behavioral phenotyping experiments. The WormBot uses standard 12-well tissue culture plates suitable for solid agar media and is built from commercially available robotics hardware. The WormBot is controlled by a web-based interface allowing control and monitoring of experiments from any internet connected device. The standard WormBot hardware features the ability to take both time-lapse bright field images and real-time video micrographs, allowing investigators to measure lifespan, as well as heathspan metrics as worms age. The open-source nature of the hardware and software will allow for users to extend the platform and implement new software and hardware features. This extensibility, coupled with the low cost and simplicity of the system, allows the automation of C. elegans survival analysis even in small laboratory settings with modest budgets.
引用
收藏
页码:961 / 973
页数:13
相关论文
共 50 条
  • [41] SIMON: Open-Source Knowledge Discovery Platform
    Tomic, Adriana
    Tomic, Ivan
    Waldron, Levi
    Geistlinger, Ludwig
    Kuhn, Max
    Spreng, Rachel L.
    Dahora, Lindsay C.
    Seaton, Kelly E.
    Tomaras, Georgia
    Hill, Jennifer
    Duggal, Niharika A.
    Pollock, Ross D.
    Lazarus, Norman R.
    Harridge, Stephen D. R.
    Lord, Janet M.
    Khatri, Purvesh
    Pollard, Andrew J.
    Davis, Mark M.
    PATTERNS, 2021, 2 (01):
  • [42] MEWron: An open-source melt electrowriting platform
    Reizabal, Ander
    Kangur, Taavet
    Saiz, Paula G.
    Menke, Sonke
    Moser, Christophe
    Brugger, Juergen
    Dalton, Paul D.
    Luposchainsky, Simon
    ADDITIVE MANUFACTURING, 2023, 71
  • [43] SMU Open-Source Platform for Synchronized Measurements
    Carducci, Carlo Guarnieri Calo
    Pau, Marco
    Cazal, Cesar
    Ponci, Ferdinanda
    Monti, Antonello
    SENSORS, 2022, 22 (14)
  • [44] pyStudio: An Open-Source Machine Learning Platform
    Gomicia-Murcia, Enrique
    Bordel Sanchez, Borja
    Souissi, Riad
    AL-Qurishi, Muhammad
    PROCEEDINGS OF THE 2023 IEEE/ACM INTERNATIONAL CONFERENCE ON ADVANCES IN SOCIAL NETWORKS ANALYSIS AND MINING, ASONAM 2023, 2023, : 436 - 440
  • [45] Microgrid Planner: An Open-Source Software Platform
    Reich, Daniel
    Frye, Leah
    INFORMS JOURNAL ON COMPUTING, 2024,
  • [46] The OpenPMU Platform for Open-Source Phasor Measurements
    Laverty, David M.
    Best, Robert J.
    Brogan, Paul
    Al Khatib, Iyad
    Vanfretti, Luigi
    Morrow, D. John
    IEEE TRANSACTIONS ON INSTRUMENTATION AND MEASUREMENT, 2013, 62 (04) : 701 - 709
  • [47] hCODE: An Open-source Platform for FPGA Accelerators
    Zhao, Qian
    Nakamichi, Takuya
    Amagasaki, Motoki
    Lida, Masahiro
    Kuga, Morihiro
    Sueyoshi, Toshinori
    2016 INTERNATIONAL CONFERENCE ON FIELD-PROGRAMMABLE TECHNOLOGY (FPT), 2016, : 205 - 208
  • [48] NextPyter: Open-Source Research Collaborative Platform
    Faenza, Francesco
    Fregni, Lisa
    Maccaferri, Emiliano
    Canali, Claudia
    PRACTICE AND EXPERIENCE IN ADVANCED RESEARCH COMPUTING 2024, PEARC 2024, 2024,
  • [49] Pharos: Open-source target illumination platform
    Sheils, Timothy
    Dac-Trung Nguyen
    Siramshetty, Vishal
    Southall, Noel
    Oprea, Tudor
    ABSTRACTS OF PAPERS OF THE AMERICAN CHEMICAL SOCIETY, 2019, 258
  • [50] Open-Source Robotic Manipulator and Sensory Platform
    Zajc, Luka Cehovin
    Rezelj, Anze
    Skocaj, Danijel
    ROBOTICS IN EDUCATION: LATEST RESULTS AND DEVELOPMENTS, 2018, 630 : 250 - 256