Alvira: comparative genomics of viral strains

被引:4
|
作者
Enault, Francois
Fremez, Romain
Baranowski, Eric
Faraut, Thomas
机构
[1] INRA, UMR444, Lab Genet Cellular, F-31326 Castanet Tolosan, France
[2] ENVT, UMR1225, Lab Interact Hotes Agents Pathogenes, F-31000 Toulouse, France
关键词
D O I
10.1093/bioinformatics/btm293
中图分类号
Q5 [生物化学];
学科分类号
071010 ; 081704 ;
摘要
Motivation: The Alvira tool is a general purpose multiple sequence alignment viewer with a special emphasis on the comparative analysis of viral genomes. This new tool has been devised specifically to address the problem of the simultaneous analysis of a large number of viral strains. The multiple alignment is embedded in a graph that can be explored at different levels of resolution. Availability: The Alvira software is available at: http://bioinfo.genopole-toulouse.prd.fr/Alvira Contact: fenault@toulouse.inra.fr Supplementary information: A tutorial is available at Alvira's homepage.
引用
收藏
页码:2178 / 2179
页数:2
相关论文
共 50 条
  • [31] Comparative genomics of clinical strains of Pseudomonas aeruginosa strains isolated from different geographic sites
    Subedi, Dinesh
    Kumarvijay, Ajay
    Kohli, Gurjeet Singh
    Rice, Scott A.
    Willcox, Mark
    SCIENTIFIC REPORTS, 2018, 8
  • [32] Comparative genomics of four strains of the edible brown alga, Cladosiphon okamuranus
    Koki Nishitsuji
    Asuka Arimoto
    Yoshitaka Yonashiro
    Kanako Hisata
    Manabu Fujie
    Mayumi Kawamitsu
    Eiichi Shoguchi
    Noriyuki Satoh
    BMC Genomics, 21
  • [33] Comparative genomics of drug-resistant strains of Mycobacterium tuberculosis in Ecuador
    Gabriel Morey-León
    Derly Andrade-Molina
    Juan Carlos Fernández-Cadena
    Luisa Berná
    BMC Genomics, 23
  • [34] Comparative Genomics of the Escherichia coli Strains АВ1157, АВ2463, АВ2494, and АВ1885
    G. B. Smirnov
    I. N. Bodoev
    A. P. Makarova
    T. B. Butusova
    V. A. Veselovsky
    A. S. Gulyaev
    E. A. Shitikov
    E. N. Ilina
    Molecular Genetics, Microbiology and Virology, 2019, 34 : 182 - 187
  • [35] Comparative genomics of drug-resistant strains of Mycobacterium tuberculosis in Ecuador
    Morey-Leon, Gabriel
    Andrade-Molina, Derly
    Carlos Fernandez-Cadena, Juan
    Berna, Luisa
    BMC GENOMICS, 2022, 23 (01)
  • [36] Comparative Genomics of Klebsiella pneumoniae Strains with Different Antibiotic Resistance Profiles
    Kumar, Vinod
    Sun, Peng
    Vamathevan, Jessica
    Li, Yong
    Ingraham, Karen
    Palmer, Leslie
    Huang, Jianzhong
    Brown, James R.
    ANTIMICROBIAL AGENTS AND CHEMOTHERAPY, 2011, 55 (09) : 4267 - 4276
  • [37] Comparative functional genomics and the bovine macroplage response to strains of the Mycobacterium genus
    Rue-Albrecht, Kevin
    Magee, David A.
    Killick, Kate E.
    Nalpas, Nicolas C.
    Gordon, Stephen V.
    MacHugh, David E.
    FRONTIERS IN IMMUNOLOGY, 2014, 5
  • [38] Comparative genomics of infective Saccharomyces cerevisiae strains reveals their food origin
    Morard, Miguel
    Perez-Traves, Laura
    Perpina, Carla
    Lairon-Peris, Maria
    Carmen Collado, Maria
    Perez-Torrado, Roberto
    Querol, Amparo
    SCIENTIFIC REPORTS, 2023, 13 (01)
  • [39] Comparative genomics of Neisseria meningitidis strains: new targets for molecular diagnostics
    Diene, S. M.
    Bertelli, C.
    Pillonel, T.
    Jacquier, N.
    Croxatto, A.
    Jaton, K.
    Greub, G.
    CLINICAL MICROBIOLOGY AND INFECTION, 2016, 22 (06) : 568.e1 - 568.e7
  • [40] Comparative genomics and evolutionary analysis of dengue virus strains circulating in Pakistan
    Ul-Rahman, Aziz
    Shabbir, Muhammad Zubair
    Rasheed, Majeeda
    Shafi, Nusrat
    Abdulrazaq, Kalsoom
    Ramzan, Hamna
    Mehmood, Rauf
    Khan, Junaid Ali
    VIRUS GENES, 2024, 60 (06) : 603 - 620