Laccase Redox Potentials: pH Dependence and Mutants, a QM/MM Study

被引:15
|
作者
Gotze, Jan P. [1 ]
Buhl, Michael [1 ]
机构
[1] Univ St Andrews, EastChem Sch Chem, St Andrews KY16 9ST, Fife, Scotland
来源
JOURNAL OF PHYSICAL CHEMISTRY B | 2016年 / 120卷 / 35期
基金
英国工程与自然科学研究理事会;
关键词
MULTICOPPER OXIDASES; ELECTRONIC-STRUCTURE; REDUCTION POTENTIALS; COMPUTER-SIMULATION; TRANSITION-ELEMENTS; COPPER SITE; BASIS-SETS; T1; COPPER; ENERGY; APPROXIMATION;
D O I
10.1021/acs.jpcb.6b04978
中图分类号
O64 [物理化学(理论化学)、化学物理学];
学科分类号
070304 ; 081704 ;
摘要
We have studied the T. versicolor laccase T1 site redox potential (RP) at the M06/6-311++G**/SDD(Cu) level of theory, employing QM/MM-optimized geometries (RI-BP86/de-f2-SVP/def2-TZVP(Cu):CHARMM) of the whole protein System with electronic embedding. The oxidation state of the trinuclear cluster was found to affect the T1 site RP by about 02-0.3 V, depending on the protein protonation state. The computed laccase RP can be drastically lowered upon introduction of a protonation state corresponding to a neutral environment, by up to -1.37 V, which is likely an overestimation of the effect in vivo. The gradual change of the protonation state by single points without optimization or equilibration results in a change that is even larger, namely up to about -2.6V. Thus, the preferred protein conformation supports a high redox potential, compensating for the RP-lowering effect of surface Charges. The predicted change in RP on going to the F463M mutant, ca. -0.1 V, is consistent with observations for a related laccase. Based on our results, we also propose and test a D206N mutant but find it to be locked in a conformation with slightly lower RP.
引用
收藏
页码:9265 / 9276
页数:12
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