Cysteine dioxygenase catalyzed C-F bond cleavage: An in silico approach

被引:3
|
作者
Song, Zhisheng [1 ]
Yue, Yue [1 ]
Feng, Shanshan [1 ]
Sun, Hui [2 ]
Li, Yanwei [1 ]
Xu, Fei [1 ]
Zhang, Qingzhu [1 ]
Wang, Wenxing [1 ]
机构
[1] Shandong Univ, Environm Res Inst, Qingdao 266237, Peoples R China
[2] Changzhou Environm Protect Technol Dev & Promot C, Changzhou 213022, Peoples R China
关键词
Quantum mechanics/molecular mechanics; Cysteine dioxygenase; C-F bond cleavage; MECHANISTIC INSIGHTS; ENZYMES; METABOLISM; REACTIVITY; OXIDATION; PATHWAYS; PROGRAM; CHARMM; ENERGY;
D O I
10.1016/j.cplett.2020.137449
中图分类号
O64 [物理化学(理论化学)、化学物理学];
学科分类号
070304 ; 081704 ;
摘要
Cysteine dioxygenase (CDO) is a vital enzyme that can regulate balance of cysteine in living organism and play a decisive role in human sulfur metabolism. However, the detailed catalytic process is still obscure. Here the catalytic mechanism of CDO toward 3,5-difluoro-1-tyrosine was investigated by combining quantum mechanics/ molecular mechanics (QM/MM) method. The results show that C-F bond cleavage is the rate-determining step with an energy barrier of 18.8 kcal/mol. Furthermore, the electrostatic influence of active site residues was studied and residues Asp87, Phe161 were highlighted as potential targets for future mutations.
引用
收藏
页数:6
相关论文
共 50 条
  • [1] Enzyme-catalyzed C-F bond formation and cleavage
    Tong, Wei
    Huang, Qun
    Li, Min
    Wang, Jian-bo
    BIORESOURCES AND BIOPROCESSING, 2019, 6 (01)
  • [2] Microbial cleavage of C-F bond
    Natarajan, R
    Azerad, R
    Badet, B
    Copin, E
    JOURNAL OF FLUORINE CHEMISTRY, 2005, 126 (04) : 425 - 436
  • [3] Electrosynthetic C-F bond cleavage
    Rockl, Johannes L.
    Robertson, Emma L.
    Lundberg, Helena
    ORGANIC & BIOMOLECULAR CHEMISTRY, 2022, 20 (34) : 6707 - 6720
  • [4] Cofactor Biogenesis in Cysteamine Dioxygenase: C-F Bond Cleavage with Genetically Incorporated Unnatural Tyrosine
    Wang, Yifan
    Griffith, Wendell P.
    Li, Jiasong
    Koto, Teruaki
    Wherritt, Daniel J.
    Fritz, Elizabeth
    Liu, Aimin
    ANGEWANDTE CHEMIE-INTERNATIONAL EDITION, 2018, 57 (27) : 8149 - 8153
  • [5] Transition-Metal-Catalyzed Alkylation of Polyfluoroarenes through C-F Bond Cleavage
    Zhang, Qian
    Xiong, Tao
    Zhang, Qian
    SYNLETT, 2021, 32 (14) : 1379 - 1384
  • [6] ELECTROCHEMICAL REDUCTION AND CLEAVAGE OF THE C-F BOND IN PERFLUOROALKANES
    PUD, AA
    GERVITS, LL
    SHAPOVAL, GS
    MIKULINA, OE
    SOVIET ELECTROCHEMISTRY, 1992, 28 (05): : 674 - 674
  • [7] Ruthenium(II)-catalyzed α-fluoroalkenylation of arenes via C-H bond activation and C-F bond cleavage
    Li, Na
    Chang, Junbiao
    Kong, Lingheng
    Li, Xingwei
    ORGANIC CHEMISTRY FRONTIERS, 2018, 5 (12): : 1978 - 1982
  • [8] Cleavage of a carbon–fluorine bond by an engineered cysteine dioxygenase
    Jiasong Li
    Wendell P. Griffith
    Ian Davis
    Inchul Shin
    Jiangyun Wang
    Fahui Li
    Yifan Wang
    Daniel J. Wherritt
    Aimin Liu
    Nature Chemical Biology, 2018, 14 : 853 - 860
  • [9] Rare Earth Metal Catalyzed C-F Bond Activation
    Jaeger, Alma D.
    Lentz, Dieter
    ZEITSCHRIFT FUR ANORGANISCHE UND ALLGEMEINE CHEMIE, 2018, 644 (21): : 1229 - 1233
  • [10] Unprecedented C-F bond cleavage in perfluoronaphthalene during cobaltocene reduction
    Kundu, Gargi
    Pramanik, Debjit
    Dash, Soumya Ranjan
    Kumar, Ravi
    Sangole, Mayur
    Tothadi, Srinu
    Ghosh, Aryya
    Vanka, Kumar
    Singh, Kirandeep
    Sen, Sakya S.
    Dalton Transactions, 2024, 53 (44) : 17789 - 17793