Examinations of the Chemical Step in Enzyme Catalysis

被引:14
|
作者
Singh, P. [1 ]
Islam, Z. [1 ]
Kohen, A. [1 ]
机构
[1] Univ Iowa, Iowa City, IA 52242 USA
来源
COMPUTATIONAL APPROACHES FOR STUDYING ENZYME MECHANISM, PT A | 2016年 / 577卷
关键词
COLI DIHYDROFOLATE-REDUCTASE; LIVER ALCOHOL-DEHYDROGENASE; THYMIDYLATE SYNTHASE; HYDRIDE TRANSFER; ESCHERICHIA-COLI; TEMPERATURE-DEPENDENCE; PROTEIN DYNAMICS; DISTAL MUTATIONS; ACTIVE-SITE; COUPLED MOTIONS;
D O I
10.1016/bs.mie.2016.05.017
中图分类号
Q5 [生物化学];
学科分类号
071010 ; 081704 ;
摘要
Advances in computational and experimental methods in enzymology have aided comprehension of enzyme-catalyzed chemical reactions. The main difficulty in comparing computational findings to rate measurements is that the first examines a single energy barrier, while the second frequently reflects a combination of many microscopic barriers. We present here intrinsic kinetic isotope effects and their temperature dependence as a useful experimental probe of a single chemical step in a complex kinetic cascade. Computational predictions are tested by this method for two model enzymes: dihydrofolate reductase and thymidylate synthase. The description highlights the significance of collaboration between experimentalists and theoreticians to develop a better understanding of enzyme-catalyzed chemical conversions.
引用
收藏
页码:287 / 318
页数:32
相关论文
共 50 条
  • [21] Protein-derived cofactors: chemical innovations expanding enzyme catalysis
    Graciano, Angelica
    Liu, Aimin
    CHEMICAL SOCIETY REVIEWS, 2025,
  • [22] Chemical complementation: A reaction-independent genetic assay for enzyme catalysis
    Baker, K
    Bleczinski, C
    Lin, HN
    Salazar-Jimenez, G
    Sengupta, D
    Krane, S
    Cornish, VW
    PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2002, 99 (26) : 16537 - 16542
  • [23] Enzyme Millisecond Conformational Dynamics Do Not Catalyze the Chemical Step
    Pisliakov, Andrei V.
    Cao, Jie
    Kamerlin, Shina C. L.
    Warshel, Arieh
    BIOPHYSICAL JOURNAL, 2010, 98 (03) : 237A - 237A
  • [24] Enzyme millisecond conformational dynamics do not catalyze the chemical step
    Pisliakov, Andrei V.
    Cao, Jie
    Kamerlin, Shina C. L.
    Warshel, Arieh
    PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2009, 106 (41) : 17359 - 17364
  • [25] Towards efficient chemical synthesis via engineering enzyme catalysis in biomimetic nanoreactors
    Liu, Jia
    Yang, Qihua
    Li, Can
    CHEMICAL COMMUNICATIONS, 2015, 51 (72) : 13731 - 13739
  • [26] The identification of chemical intermediates in enzyme catalysis by the rapid quench-flow technique
    T. E. Barman
    S. R. W. Bellamy
    H. Gutfreund
    S. E. Halford
    C. Lionne
    Cellular and Molecular Life Sciences CMLS, 2006, 63 : 2571 - 2583
  • [28] Mechano-chemical switch to control reactive intermediates by negative enzyme catalysis
    Brunk, Elizabeth
    Rothlisberger, Ursula
    ABSTRACTS OF PAPERS OF THE AMERICAN CHEMICAL SOCIETY, 2013, 245
  • [29] The identification of chemical intermediates in enzyme catalysis by the rapid quench-flow technique
    Barman, T. E.
    Bellamy, S. R. W.
    Gutfreund, H.
    Halford, S. E.
    Lionne, C.
    CELLULAR AND MOLECULAR LIFE SCIENCES, 2006, 63 (22) : 2571 - 2583
  • [30] Thermo chemical examinations
    Roth, WA
    von Auwers, K
    JUSTUS LIEBIGS ANNALEN DER CHEMIE, 1915, 407 (1/3): : 109 - 111