Why are coarse-grained force fields too fast? A look at dynamics of four coarse-grained polymers

被引:54
|
作者
Depa, Praveen [1 ]
Chen, Chunxia [1 ]
Maranas, Janna K. [1 ]
机构
[1] 132C Fenske Lab, Dept Chem Engn, University Pk, PA 16802 USA
来源
JOURNAL OF CHEMICAL PHYSICS | 2011年 / 134卷 / 01期
关键词
COMPUTER-SIMULATIONS; LOCAL DYNAMICS; POLYISOPRENE; POLYETHYLENE; RELAXATION; POTENTIALS; SYSTEMS; MODELS; CHAIN; MELTS;
D O I
10.1063/1.3513365
中图分类号
O64 [物理化学(理论化学)、化学物理学];
学科分类号
070304 ; 081704 ;
摘要
Coarse-grained models decrease the number of force sites and thus reduce computational requirements for molecular simulation. While these models are successful in describing structural properties, dynamic evolution is faster than the corresponding atomistic simulations or experiments. We consider coarse-grained models for four polymers and one polymer mixture, where accurate dynamics are obtained by scaling to match the mean-squared displacements of the corresponding atomistic descriptions. We show that the required scaling is dictated by local friction and that this scaling is only valid after the onset of continuous motion. (C) 2011 American Institute of Physics. [doi:10.1063/1.3513365]
引用
收藏
页数:8
相关论文
共 50 条
  • [1] Contrastive Learning of Coarse-Grained Force Fields
    Ding, Xinqiang
    Zhang, Bin
    JOURNAL OF CHEMICAL THEORY AND COMPUTATION, 2022, : 6334 - 6344
  • [2] Machine Learning of Coarse-Grained Molecular Dynamics Force Fields
    Wang, Jiang
    Olsson, Simon
    Wehmeyer, Christoph
    Perez, Adria
    Charron, Nicholas E.
    de Fabritiis, Gianni
    Noe, Frank
    Clementi, Cecilia
    ACS CENTRAL SCIENCE, 2019, 5 (05) : 755 - 767
  • [3] Machine learning of coarse-grained molecular dynamics force fields
    Noe, Frank
    Clementi, Cecilia
    ABSTRACTS OF PAPERS OF THE AMERICAN CHEMICAL SOCIETY, 2019, 258
  • [4] Learning coarse-grained force fields for fibrogenesis modeling
    Zhang, Ziji
    Kementzidis, Georgios
    Zhang, Peng
    Zhang, Leili
    Kozloski, James
    Hansen, Adam
    Rafailovich, Miriam
    Simon, Marcia
    Deng, Yuefan
    COMPUTER PHYSICS COMMUNICATIONS, 2024, 295
  • [5] Unifying coarse-grained force fields for folded and disordered
    Latham, Andrew P.
    Zhang, Bin
    CURRENT OPINION IN STRUCTURAL BIOLOGY, 2022, 72 : 63 - 70
  • [6] Transferability of coarse-grained force fields:: The polymer case
    Carbone, Paola
    Varzaneh, Hossein Ali Karimi
    Chen, Xiaoyu
    Mueller-Plathe, Florian
    JOURNAL OF CHEMICAL PHYSICS, 2008, 128 (06):
  • [7] REVLD: A coarse-grained model for polymers
    Bailey, A. G.
    Lowe, C. P.
    Sutton, A. P.
    COMPUTER PHYSICS COMMUNICATIONS, 2009, 180 (04) : 594 - 599
  • [8] A polarizable coarse-grained water model for coarse-grained proteins simulations
    Ha-Duong, Tap
    Basdevant, Nathalie
    Borgis, Daniel
    CHEMICAL PHYSICS LETTERS, 2009, 468 (1-3) : 79 - 82
  • [9] Coarse-grained dynamics of transiently bound fast linkers
    Marbach, Sophie
    Miles, Christopher E.
    JOURNAL OF CHEMICAL PHYSICS, 2023, 158 (21):
  • [10] Coarse-grained molecular dynamics simulation of polymers: Structures and dynamics
    Shi, Rui
    Qian, Hu-Jun
    Lu, Zhong-Yuan
    WILEY INTERDISCIPLINARY REVIEWS-COMPUTATIONAL MOLECULAR SCIENCE, 2023, 13 (06)