Massively parallel sequencing techniques for forensics: A review

被引:113
|
作者
Bruijns, Brigitte [1 ,2 ]
Tiggelaar, Roald [1 ,3 ]
Gardeniers, Han [1 ]
机构
[1] Univ Twente, MESA Inst Nanotechnol, Mesoscale Chem Syst, Enschede, Netherlands
[2] Sax Univ Appl Sci, Life Sci Engn & Design, Enschede, Netherlands
[3] Univ Twente, MESA Inst Nanotechnol, NanoLab Cleanroom, Enschede, Netherlands
关键词
DNA analysis; Forensics; Massively parallel sequencing; Short tandem repeat; Single nucleotide polymorphism; AMPLISEQ(TM) IDENTITY PANEL; PERSONAL GENOME MACHINE; TORRENT PGM(TM) PLATFORM; SIGNATURE PREP KIT; ID ANCESTRY PANEL; HID STR 10-PLEX; ION PGM(TM); DEVELOPMENTAL VALIDATION; MITOCHONDRIAL GENOME; FORENSEQ(TM) SYSTEM;
D O I
10.1002/elps.201800082
中图分类号
Q5 [生物化学];
学科分类号
071010 ; 081704 ;
摘要
DNA sequencing, starting with Sanger's chain termination method in 1977 and evolving into the next generation sequencing (NGS) techniques of today that employ massively parallel sequencing (MPS), has become essential in application areas such as biotechnology, virology, and medical diagnostics. Reflected by the growing number of articles published over the last 2-3 years, these techniques have also gained attention in the forensic field. This review contains a brief description of first, second, and third generation sequencing techniques, and focuses on the recent developments in human DNA analysis applicable in the forensic field. Relevance to the forensic analysis is that besides generation of standard STR-profiles, DNA repeats can also be sequenced to look for polymorphisms. Furthermore, additional SNPs can be sequenced to acquire information on ancestry, paternity or phenotype. The current MPS systems are also very helpful in cases where only a limited amount of DNA or highly degraded DNA has been secured from a crime scene. If enough autosomal DNA is not present, mitochondrial DNA can be sequenced for maternal lineage analysis. These developments clearly demonstrate that the use of NGS will grow into an indispensable tool for forensic science.
引用
收藏
页码:2642 / 2654
页数:13
相关论文
共 50 条
  • [21] Massively parallel sequencing for copy number detection
    Scheinin, Ilari
    Sie, Daoud
    Israeli, Danielle
    Eijk, Paul
    Knuutila, Sakari
    Meijer, Gerrit A.
    Ylstra, Bauke
    CELLULAR ONCOLOGY, 2012, 35 : S50 - S51
  • [22] Mixture deconvolution by massively parallel sequencing of microhaplotypes
    Bennett, Lindsay
    Oldoni, Fabio
    Long, Kelly
    Cisana, Selena
    Madella, Katrina
    Wootton, Sharon
    Chang, Joseph
    Hasegawa, Ryo
    Lagace, Robert
    Kidd, Kenneth K.
    Podini, Daniele
    INTERNATIONAL JOURNAL OF LEGAL MEDICINE, 2019, 133 (03) : 719 - 729
  • [23] Targeted bisulfite sequencing by solution hybrid selection and massively parallel sequencing
    Lee, Eun-Joon
    Pei, Lirong
    Srivastava, Gyan
    Joshi, Trupti
    Kushwaha, Garima
    Choi, Jeong-Hyeon
    Robertson, Keith D.
    Wang, Xinguo
    Colbourne, John K.
    Zhang, Lu
    Schroth, Gary P.
    Xu, Dong
    Zhang, Kun
    Shi, Huidong
    NUCLEIC ACIDS RESEARCH, 2011, 39 (19)
  • [24] Entire Mitochondrial DNA Sequencing on Massively Parallel Sequencing for the Korean Population
    Park, Sohyung
    Cho, Sohee
    Seo, Hee Jin
    Lee, Ji Hyun
    Kim, Moon-Young
    Lee, Soong Deok
    JOURNAL OF KOREAN MEDICAL SCIENCE, 2017, 32 (04) : 587 - 592
  • [25] Increasing the reach of forensic genetics with massively parallel sequencing
    Bruce Budowle
    Sarah E. Schmedes
    Frank R. Wendt
    Forensic Science, Medicine and Pathology, 2017, 13 : 342 - 349
  • [26] Characterization of oral tumors by massively parallel ligation sequencing
    Laborde, Rebecca R.
    Tuch, Brian B.
    Olsen, Kerry D.
    Kasperbauer, Jan L.
    Moore, Eric J.
    Barker, Melissa A.
    De la Vega, Francisco M.
    Smith, David I.
    CANCER RESEARCH, 2010, 70
  • [27] Massively parallel sequencing: the new frontier of hematologic genomics
    Johnsen, Jill M.
    Nickerson, Deborah A.
    Reiner, Alex P.
    BLOOD, 2013, 122 (19) : 3268 - 3275
  • [28] Massively Parallel Sequencing Analysis of Infiltrating Epitheliosis of the Breast
    Eberle, Carey
    Piscuoglio, Salvatore
    Rakha, Emad
    Yamaguchi, Rin
    Ng, Charlotte
    Weigelt, Britta
    Reis-Filho, Jorge
    Ellis, Ian
    MODERN PATHOLOGY, 2015, 28 : 42A - 42A
  • [29] Massively Parallel Sequencing Analysis of Infiltrating Epitheliosis of the Breast
    Eberle, Carey
    Piscuoglio, Salvatore
    Rakha, Emad
    Yamaguchi, Rin
    Ng, Charlotte
    Weigelt, Britta
    Reis-Filho, Jorge
    Ellis, Ian
    LABORATORY INVESTIGATION, 2015, 95 : 42A - 42A
  • [30] Increasing the reach of forensic genetics with massively parallel sequencing
    Budowle, Bruce
    Schmedes, Sarah E.
    Wendt, Frank R.
    FORENSIC SCIENCE MEDICINE AND PATHOLOGY, 2017, 13 (03) : 342 - 349