A rule-based framework for gene regulation pathways discovery

被引：0

作者：

Wilczynski, B ^{[1
]}

Hvidsten, T ^{[1
]}

Kryshtafovych, A ^{[1
]}

Stubbs, L ^{[1
]}

Komorowski, J ^{[1
]}

Fidelis, K ^{[1
]}

机构：

[1] Lawrence Livermore Natl Lab, Livermore, CA 94550 USA

来源：

PROCEEDINGS OF THE 2003 IEEE BIOINFORMATICS CONFERENCE | 2003年

关键词：

D O I：

10.1109/CSB.2003.1227361

中图分类号：

Q [生物科学];

学科分类号：

07 ; 0710 ; 09 ;

摘要：

We present a novel approach for rule discovery in the area of gene regulation. The method is based on supervised machine learning and is designed to reveal relationships between transcription factors and gene expression. As a representation of the gene regulatory circuit we have chosen a special form of the IF-THEN rules associating predefined features, taken here as a generalized idea of transcription factor binding sites in gene regulatory regions, with the corresponding gene expression profiles.

引用

页码：435 / 436

页数：2

共 50 条

[31] Odinson: A Fast Rule-based Information Extraction Framework
Valenzuela-Escarcega, Marco A.
Hahn-Powell, Gus
Bell, Dane
[J]. PROCEEDINGS OF THE 12TH INTERNATIONAL CONFERENCE ON LANGUAGE RESOURCES AND EVALUATION (LREC 2020), 2020, : 2183 - 2191
[32] A rewriting framework for rule-based programming dynamic applications
Doroshenko, Anatoliy
Shevchenko, Ruslan
[J]. FUNDAMENTA INFORMATICAE, 2006, 72 (1-3) : 95 - 108
[33] THE EPISTEMOLOGY OF A RULE-BASED EXPERT SYSTEM - A FRAMEWORK FOR EXPLANATION
CLANCEY, WJ
[J]. ARTIFICIAL INTELLIGENCE, 1983, 20 (03) : 215 - 251
[34] Rule-based framework for automated negotiation: Initial implementation
Badica, C
Badita, A
Ganzha, M
Iordache, A
Paprzycki, M
[J]. RULES AND RULE MARKUP LANGUAGES FOR THE SEMANTIC WEB, PROCEEDINGS, 2005, 3791 : 193 - 198
[35] RuleBAM: A rule-based framework for business activity management
Jeng, JJ
Flaxer, D
Kapoor, S
[J]. 2004 IEEE INTERNATIONAL CONFERENCE ON SERVICES COMPUTING, PROCEEDINGS, 2004, : 262 - 270
[36] Avoiding boundaries: Antepenultimate stress in a rule-based framework
Beasley, T
Crosswhite, K
[J]. LINGUISTIC INQUIRY, 2003, 34 (03) : 361 - 392
[37] CARSVM: A class association rule-based classification framework and its application to gene expression data
Kianmehr, Keivan
Alhajj, Reda
[J]. ARTIFICIAL INTELLIGENCE IN MEDICINE, 2008, 44 (01) : 7 - 25
[38] Atlas: automatic modeling of regulation of bacterial gene expression and metabolism using rule-based languages
Santibanez, Rodrigo
Garrido, Daniel
Martin, Alberto J. M.
[J]. BIOINFORMATICS, 2020, 36 (22-23) : 5473 - 5480
[39] ProMiner: rule-based protein and gene entity recognition
Hanisch, D
Fundel, K
Mevissen, HT
Zimmer, R
Fluck, J
[J]. BMC BIOINFORMATICS, 2005, 6 (Suppl 1)
[40] Scalable rule-based gene expression data classification
Iwen, Mark A.
Lang, Willis
Patel, Jignesh M.
[J]. 2008 IEEE 24TH INTERNATIONAL CONFERENCE ON DATA ENGINEERING, VOLS 1-3, 2008, : 1062 - +

← 1 2 3 4 5 →